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The map label for this gene is yeaM [H]

Identifier: 238894615

GI number: 238894615

Start: 2510053

End: 2510904

Strand: Direct

Name: yeaM [H]

Synonym: KP1_2616

Alternate gene names: 238894615

Gene position: 2510053-2510904 (Clockwise)

Preceding gene: 238894613

Following gene: 238894617

Centisome position: 47.82

GC content: 53.4

Gene sequence:

>852_bases
GTGAAAGCGATGAATACTTTACAATCGACTAACTGGCTTCAGTACGGTATAAAAGACATTAAACACCTCAAACACGCCAA
TATGCACGATCCATTGATTCCATTCGAACCGGTGTTTTCCCCCCAGGGACCCACTTTACTCGTCGCGGTACGTCAGTCTG
AGGTAATACGGGAGACTCCACGCCACCATCACAGCTGTGGGCAGTTAATCGGTGCCATACGTGGGCTACTTACGGTCGAT
GGCGGTGATTGTCGCTGGGTGGTACCGGCAACACATGCCGTCTGGATACCGCCAGGTGTTCCGCACGGCCTGCGCTCGCA
CGGTCCATATTCAGGATGGAGTGTTTATGTTTCTGCCAAAGCCTGTGGCGAGCTACCTGATAAGCCATCTGTTCTCTCAA
TGACAAATCTGCTGCGTGAAGCGATAACGCGAGCGGCTGCATGGCAAGGTGTAGAGCTTAATGCGTCCCAAAAACGTTTA
GCTGGCGTTATTCTTGATGAAATTGGTTCCCTTCCCAGGGTTAATCTTGGGCTTCCAATGCCGCAAGATAGCCGATTGCT
CAGAATCGCGCAGGCGCTGTCAGCAAACCCGGACGACGGGCGCAGGTTGGAAGAATGGGCAGCCTGGGCCGGCATGTCAT
CACGCACGCTCACGCGACGATTCCGAGCCGAAACGGGTTTTAGCTTCAATGAATGGCGACAGCGGATACGCTTACTCAGG
GCTCTTGAGCTACTGGCTGCCGGCAAGCCAGTGACGGCGATAGCGCTGGATCTGGGATATGACAATGTGAGTGCCTTCAT
AGCCTTGTTCCGTCGGATGTTCGGCACTACTCCAGGGCGGTATAAAATTTAA

Upstream 100 bases:

>100_bases
TAAAATAGCGACTGAGTATCCGATCCAGTGGTATCTGTTGGTGGTTGATAATGTCATCCAATACCCTAGTAATAGTAATC
ATTTTGATGGTTAGTCCTCT

Downstream 100 bases:

>100_bases
TTATCTCTTCGCTGAACATGATGCGTTATCCGCCGCTTTGATTACGTTTGTCATGGGCTGAGAGGGGCAAGTAATTCGGG
CCCCTGATTTTTCACATTGC

Product: putative AraC-type regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MKAMNTLQSTNWLQYGIKDIKHLKHANMHDPLIPFEPVFSPQGPTLLVAVRQSEVIRETPRHHHSCGQLIGAIRGLLTVD
GGDCRWVVPATHAVWIPPGVPHGLRSHGPYSGWSVYVSAKACGELPDKPSVLSMTNLLREAITRAAAWQGVELNASQKRL
AGVILDEIGSLPRVNLGLPMPQDSRLLRIAQALSANPDDGRRLEEWAAWAGMSSRTLTRRFRAETGFSFNEWRQRIRLLR
ALELLAAGKPVTAIALDLGYDNVSAFIALFRRMFGTTPGRYKI

Sequences:

>Translated_283_residues
MKAMNTLQSTNWLQYGIKDIKHLKHANMHDPLIPFEPVFSPQGPTLLVAVRQSEVIRETPRHHHSCGQLIGAIRGLLTVD
GGDCRWVVPATHAVWIPPGVPHGLRSHGPYSGWSVYVSAKACGELPDKPSVLSMTNLLREAITRAAAWQGVELNASQKRL
AGVILDEIGSLPRVNLGLPMPQDSRLLRIAQALSANPDDGRRLEEWAAWAGMSSRTLTRRFRAETGFSFNEWRQRIRLLR
ALELLAAGKPVTAIALDLGYDNVSAFIALFRRMFGTTPGRYKI
>Mature_283_residues
MKAMNTLQSTNWLQYGIKDIKHLKHANMHDPLIPFEPVFSPQGPTLLVAVRQSEVIRETPRHHHSCGQLIGAIRGLLTVD
GGDCRWVVPATHAVWIPPGVPHGLRSHGPYSGWSVYVSAKACGELPDKPSVLSMTNLLREAITRAAAWQGVELNASQKRL
AGVILDEIGSLPRVNLGLPMPQDSRLLRIAQALSANPDDGRRLEEWAAWAGMSSRTLTRRFRAETGFSFNEWRQRIRLLR
ALELLAAGKPVTAIALDLGYDNVSAFIALFRRMFGTTPGRYKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=224, Percent_Identity=34.375, Blast_Score=124, Evalue=8e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 31393; Mature: 31393

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAMNTLQSTNWLQYGIKDIKHLKHANMHDPLIPFEPVFSPQGPTLLVAVRQSEVIRETP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHCC
RHHHSCGQLIGAIRGLLTVDGGDCRWVVPATHAVWIPPGVPHGLRSHGPYSGWSVYVSAK
HHHHHHHHHHHHHHHHEEECCCCEEEEEECCEEEECCCCCCCCHHCCCCCCCEEEEEEHH
ACGELPDKPSVLSMTNLLREAITRAAAWQGVELNASQKRLAGVILDEIGSLPRVNLGLPM
HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCC
PQDSRLLRIAQALSANPDDGRRLEEWAAWAGMSSRTLTRRFRAETGFSFNEWRQRIRLLR
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
ALELLAAGKPVTAIALDLGYDNVSAFIALFRRMFGTTPGRYKI
HHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKAMNTLQSTNWLQYGIKDIKHLKHANMHDPLIPFEPVFSPQGPTLLVAVRQSEVIRETP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHCC
RHHHSCGQLIGAIRGLLTVDGGDCRWVVPATHAVWIPPGVPHGLRSHGPYSGWSVYVSAK
HHHHHHHHHHHHHHHHEEECCCCEEEEEECCEEEECCCCCCCCHHCCCCCCCEEEEEEHH
ACGELPDKPSVLSMTNLLREAITRAAAWQGVELNASQKRLAGVILDEIGSLPRVNLGLPM
HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCC
PQDSRLLRIAQALSANPDDGRRLEEWAAWAGMSSRTLTRRFRAETGFSFNEWRQRIRLLR
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
ALELLAAGKPVTAIALDLGYDNVSAFIALFRRMFGTTPGRYKI
HHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]