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The map label for this gene is ydfH [H]

Identifier: 238894611

GI number: 238894611

Start: 2505867

End: 2506553

Strand: Reverse

Name: ydfH [H]

Synonym: KP1_2612

Alternate gene names: 238894611

Gene position: 2506553-2505867 (Counterclockwise)

Preceding gene: 238894612

Following gene: 238894606

Centisome position: 47.76

GC content: 52.84

Gene sequence:

>687_bases
ATGGCCGCAGAATCGCAACTGAATCCGACGCAACCCGTCAATCAGCAAATTTATCGCATCCTCCGCCGGGATATCGTTCA
CTGCCTGATCCCGCCTGGTACACCGCTGTCGGAGAAAGAAGTCTCCGTGCGTTTTGCGGTGTCTCGTCAGCCGGTGCGCG
AAGCCTTCATTAAGCTGGCGGAAAACGGACTTATCCAGATTCGTCCCCAGCGCGGTAGCTACGTCAATAAAATCTCATTG
TCGCAGGTGCGTAATGGTTGCTTCGTCCGCCAGGCGATCGAGTGCGCGGTGGTTCGCCGTGCCGCCGGCATGATTAACGA
AGAGCAACTTTATCAGCTGGAACAGAATCTTCACCAGCAGCGTATTGCCGTTGATCGGCAGCAGTTAAACGACTTTTTCC
TGCTCGATGATGAATTTCACCAGAAGCTGTCGATTATTGCCGACTGTCAGCTGGCCTGGGAGACAGTGGAAAATATTAAA
GCCGCCATCGATCGCGTCCGCTATATGAGTCTGGACCATGTCACCTCTCCGGAGATGCTTCTGCGCCAGCATCATGAGAT
TTTCACCGCGCTGGAAAAACGCGATGCCGAGGCGGTAGAAAAAGCCATGAGTATCCATTTGCATGAAATCAGCGAATCCG
TACTGCTGATTCGCCAGGAGAACCGCGACTGGTTTAGTGAAGAATAA

Upstream 100 bases:

>100_bases
CAGGGCTAACCGTCAGCCACCCGGCCTGCGGGCCGGGTATGGGCGGAAACGCAAAAAACGCGTAAAATAGTGCGCATAAC
CCCCTAAAAAGTAACCATCA

Downstream 100 bases:

>100_bases
GAGTCAGACGGCTGCCGGCATGGCCGACGCAGCCGTCCTCATTGAAGGGATTATCTAACGACCAATACCGGCGTTTTGGC
GTAGCGCAGAATTGACTCGG

Product: putative GntR-family transcriptional repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MAAESQLNPTQPVNQQIYRILRRDIVHCLIPPGTPLSEKEVSVRFAVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISL
SQVRNGCFVRQAIECAVVRRAAGMINEEQLYQLEQNLHQQRIAVDRQQLNDFFLLDDEFHQKLSIIADCQLAWETVENIK
AAIDRVRYMSLDHVTSPEMLLRQHHEIFTALEKRDAEAVEKAMSIHLHEISESVLLIRQENRDWFSEE

Sequences:

>Translated_228_residues
MAAESQLNPTQPVNQQIYRILRRDIVHCLIPPGTPLSEKEVSVRFAVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISL
SQVRNGCFVRQAIECAVVRRAAGMINEEQLYQLEQNLHQQRIAVDRQQLNDFFLLDDEFHQKLSIIADCQLAWETVENIK
AAIDRVRYMSLDHVTSPEMLLRQHHEIFTALEKRDAEAVEKAMSIHLHEISESVLLIRQENRDWFSEE
>Mature_227_residues
AAESQLNPTQPVNQQIYRILRRDIVHCLIPPGTPLSEKEVSVRFAVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISLS
QVRNGCFVRQAIECAVVRRAAGMINEEQLYQLEQNLHQQRIAVDRQQLNDFFLLDDEFHQKLSIIADCQLAWETVENIKA
AIDRVRYMSLDHVTSPEMLLRQHHEIFTALEKRDAEAVEKAMSIHLHEISESVLLIRQENRDWFSEE

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=228, Percent_Identity=80.7017543859649, Blast_Score=388, Evalue=1e-109,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26494; Mature: 26362

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAESQLNPTQPVNQQIYRILRRDIVHCLIPPGTPLSEKEVSVRFAVSRQPVREAFIKLA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHCCCHHHHHHHHHH
ENGLIQIRPQRGSYVNKISLSQVRNGCFVRQAIECAVVRRAAGMINEEQLYQLEQNLHQQ
CCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
RIAVDRQQLNDFFLLDDEFHQKLSIIADCQLAWETVENIKAAIDRVRYMSLDHVTSPEML
HHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LRQHHEIFTALEKRDAEAVEKAMSIHLHEISESVLLIRQENRDWFSEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCC
>Mature Secondary Structure 
AAESQLNPTQPVNQQIYRILRRDIVHCLIPPGTPLSEKEVSVRFAVSRQPVREAFIKLA
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHCCCHHHHHHHHHH
ENGLIQIRPQRGSYVNKISLSQVRNGCFVRQAIECAVVRRAAGMINEEQLYQLEQNLHQQ
CCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
RIAVDRQQLNDFFLLDDEFHQKLSIIADCQLAWETVENIKAAIDRVRYMSLDHVTSPEML
HHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LRQHHEIFTALEKRDAEAVEKAMSIHLHEISESVLLIRQENRDWFSEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]