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The map label for this gene is ynfC [H]

Identifier: 238894604

GI number: 238894604

Start: 2499800

End: 2500540

Strand: Direct

Name: ynfC [H]

Synonym: KP1_2605

Alternate gene names: 238894604

Gene position: 2499800-2500540 (Clockwise)

Preceding gene: 238894597

Following gene: 238894607

Centisome position: 47.63

GC content: 56.82

Gene sequence:

>741_bases
ATGATCGGATGTACACAAAAGGAATCGTCTGTGAAAAGATTGTATTGGCTGATCCCGGCAGCGCTGCTGCTGACGGCATG
CGACCGTAAAAGCGCCCCGGACGCCTTCACCCCGGAGATGGCGAGTTTTTCCAATGAGTTTGAGTTTGATCCCCTGCGCG
GGCCGGTGAAAGATTTTAGCCAGACGCTGCTGGATGAACACGATGTGGTGGTCAAGAAGGTGAGCGCTCAGCTCTCCAGG
GAAGGGTGTTTCGATCTGCTGACCCTGGAAGATGTGGAGAACAAAACCGGCGCCACGCTGCTGCTGGACGCCAACTATTA
CGTCGACGGGCGCACCCACGAGAAGCGGCTGCGCCTGCAGGGCAAGTGTCAGCTGGCGGAGATGCCTGCCGCCGGGGTGA
ATTGGGAGACGGATGATAACGGTTTTATTATCAGCGCACGCGGCAAAGAGACCACCGCCACCTACCGCTATGACAGCGAT
GGCTATCCGCTGGGAAAAACCACCACCGCCAAAGAGGAGCGATTTACCGTCGCCTCAACGCCGTCAAAGGATCCGCGTAA
GAAATTGGACTATACCGCCATCAGCACCTTCAACGATCGCACGCTGGGCACGGTGCGTCAGACCTGCGACTACGACGATC
ACGACAATCCGCTGAGCTGTGAGCTGCAGGTGATCGATGAAAGCGTCCAGCCGCCGCTGACCCGCCACTACACCATTAAA
AACCGTATCGATTATTACTGA

Upstream 100 bases:

>100_bases
GCAGCGCCGGTGCAGAGGGATAGTTTCATCTTACGCTCCTTATCGATGTTATCCAGATTTAAGCATAGCAGAACTGGTGT
AAACAATTGTATTTGCTAAT

Downstream 100 bases:

>100_bases
GCCGTCGGCTTCAGCAGGGACGGCCCGGGCGTTTTGTGCTCGGCCAGATACTGGTGCTGGAACAGGCACATGCGGATGGT
GTTGCGGTACTCGCCGTTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MIGCTQKESSVKRLYWLIPAALLLTACDRKSAPDAFTPEMASFSNEFEFDPLRGPVKDFSQTLLDEHDVVVKKVSAQLSR
EGCFDLLTLEDVENKTGATLLLDANYYVDGRTHEKRLRLQGKCQLAEMPAAGVNWETDDNGFIISARGKETTATYRYDSD
GYPLGKTTTAKEERFTVASTPSKDPRKKLDYTAISTFNDRTLGTVRQTCDYDDHDNPLSCELQVIDESVQPPLTRHYTIK
NRIDYY

Sequences:

>Translated_246_residues
MIGCTQKESSVKRLYWLIPAALLLTACDRKSAPDAFTPEMASFSNEFEFDPLRGPVKDFSQTLLDEHDVVVKKVSAQLSR
EGCFDLLTLEDVENKTGATLLLDANYYVDGRTHEKRLRLQGKCQLAEMPAAGVNWETDDNGFIISARGKETTATYRYDSD
GYPLGKTTTAKEERFTVASTPSKDPRKKLDYTAISTFNDRTLGTVRQTCDYDDHDNPLSCELQVIDESVQPPLTRHYTIK
NRIDYY
>Mature_246_residues
MIGCTQKESSVKRLYWLIPAALLLTACDRKSAPDAFTPEMASFSNEFEFDPLRGPVKDFSQTLLDEHDVVVKKVSAQLSR
EGCFDLLTLEDVENKTGATLLLDANYYVDGRTHEKRLRLQGKCQLAEMPAAGVNWETDDNGFIISARGKETTATYRYDSD
GYPLGKTTTAKEERFTVASTPSKDPRKKLDYTAISTFNDRTLGTVRQTCDYDDHDNPLSCELQVIDESVQPPLTRHYTIK
NRIDYY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0257 family [H]

Homologues:

Organism=Escherichia coli, GI87081939, Length=234, Percent_Identity=60.6837606837607, Blast_Score=308, Evalue=2e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010646
- ProDom:   PD120112 [H]

Pfam domain/function: PF06788 UPF0257 [H]

EC number: NA

Molecular weight: Translated: 27816; Mature: 27816

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGCTQKESSVKRLYWLIPAALLLTACDRKSAPDAFTPEMASFSNEFEFDPLRGPVKDFS
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHH
QTLLDEHDVVVKKVSAQLSREGCFDLLTLEDVENKTGATLLLDANYYVDGRTHEKRLRLQ
HHHHCCHHHHHHHHHHHHHHCCCEEEEEHHCCCCCCCCEEEEECCEEECCCCHHHHHEEC
GKCQLAEMPAAGVNWETDDNGFIISARGKETTATYRYDSDGYPLGKTTTAKEERFTVAST
CCEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECC
PSKDPRKKLDYTAISTFNDRTLGTVRQTCDYDDHDNPLSCELQVIDESVQPPLTRHYTIK
CCCCHHHHCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEC
NRIDYY
CCCCCC
>Mature Secondary Structure
MIGCTQKESSVKRLYWLIPAALLLTACDRKSAPDAFTPEMASFSNEFEFDPLRGPVKDFS
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHH
QTLLDEHDVVVKKVSAQLSREGCFDLLTLEDVENKTGATLLLDANYYVDGRTHEKRLRLQ
HHHHCCHHHHHHHHHHHHHHCCCEEEEEHHCCCCCCCCEEEEECCEEECCCCHHHHHEEC
GKCQLAEMPAAGVNWETDDNGFIISARGKETTATYRYDSDGYPLGKTTTAKEERFTVAST
CCEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECC
PSKDPRKKLDYTAISTFNDRTLGTVRQTCDYDDHDNPLSCELQVIDESVQPPLTRHYTIK
CCCCHHHHCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEC
NRIDYY
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA