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The map label for this gene is ynfI [H]

Identifier: 238894599

GI number: 238894599

Start: 2494736

End: 2495347

Strand: Reverse

Name: ynfI [H]

Synonym: KP1_2600

Alternate gene names: 238894599

Gene position: 2495347-2494736 (Counterclockwise)

Preceding gene: 238894600

Following gene: 238894598

Centisome position: 47.54

GC content: 64.38

Gene sequence:

>612_bases
GTGATGATGCCGATCCCAAATCGCGACGCCGTCGCGTTAAGCGCCCGCACCCTGGGCGCGCTGTTCTCTTATGCGCCGAA
TAGCGCGGAAATTGCGCCGCTGGTCGCCGCCTTCCAGGACGGGAGCTGGCAGCAGCAGTGGCCCTTCCCGGTCGCAGCCC
CGCTGGCGTCAGGGTTTGCCGCATCGGCTGAAGAAACGTTGCCGGAAGCCTGGCAGCGCCTGTTTATCGGGCCATGGGCC
CTGCCGGCGCCGCCCTGGGGCTCTGTCTGGCTGGATAAAGAGTCTGTGCTGTTTGGCGATTCCACGCTGGCTCTGCGCCA
GTGGATGCGCGAGAACGGTATCGCGCTGGAGGCCGATGGCAACGAACCGGAAGATCATTTCGGCACCGTGCTACTCCTGG
CGGCATGGTTGTGCGAAACGGAGCAGGATGCGTTGTTCGCTCAACTGCTGGCCTGGCACCTGCTGCCGTGGTCCGGGCGT
TTCCTGAGCGTCTTTGTCGACCATGCCGCCCACCCCTTCTATCAGGCGCTGGGTCAGCTGGCGCAGGCGACTCTGGCGCA
GTGGCAGGAGAATCTGCCGATCGCCGTGGCGCAAAAACCGCTCTATCGTTAA

Upstream 100 bases:

>100_bases
GTATTGGCCGCGGCCTGTTTTATGGTCTGCATATGACCGTCGGTCTGGCGGTTGCCGGTTAATGAGACGGCGCGCAGGCG
CGCGCCGCAGAAAGGAATAA

Downstream 100 bases:

>100_bases
CCCTTCGCCGCGCCGGTATCCGGCGCGGTTTTATTTTGCCGCTTCCCAGCCTTTCACCCGCACTTATCGCTTTTGCATCT
AAGGTTATTCCCTATCACAA

Product: twin-argninine leader-binding protein DmsD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MMMPIPNRDAVALSARTLGALFSYAPNSAEIAPLVAAFQDGSWQQQWPFPVAAPLASGFAASAEETLPEAWQRLFIGPWA
LPAPPWGSVWLDKESVLFGDSTLALRQWMRENGIALEADGNEPEDHFGTVLLLAAWLCETEQDALFAQLLAWHLLPWSGR
FLSVFVDHAAHPFYQALGQLAQATLAQWQENLPIAVAQKPLYR

Sequences:

>Translated_203_residues
MMMPIPNRDAVALSARTLGALFSYAPNSAEIAPLVAAFQDGSWQQQWPFPVAAPLASGFAASAEETLPEAWQRLFIGPWA
LPAPPWGSVWLDKESVLFGDSTLALRQWMRENGIALEADGNEPEDHFGTVLLLAAWLCETEQDALFAQLLAWHLLPWSGR
FLSVFVDHAAHPFYQALGQLAQATLAQWQENLPIAVAQKPLYR
>Mature_203_residues
MMMPIPNRDAVALSARTLGALFSYAPNSAEIAPLVAAFQDGSWQQQWPFPVAAPLASGFAASAEETLPEAWQRLFIGPWA
LPAPPWGSVWLDKESVLFGDSTLALRQWMRENGIALEADGNEPEDHFGTVLLLAAWLCETEQDALFAQLLAWHLLPWSGR
FLSVFVDHAAHPFYQALGQLAQATLAQWQENLPIAVAQKPLYR

Specific function: Binds to the twin-arginine signal peptide of dmsA and torA. Could be required for the biogenesis of DMSO reductase rather than for the targeting of dmsA to the inner membrane [H]

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein. Cytoplasm (By similarity). Note=Mainly cytoplasmic under aerobic conditions, and found in the inner membrane under anaerobic conditions (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. DmsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081942, Length=204, Percent_Identity=62.7450980392157, Blast_Score=259, Evalue=1e-70,
Organism=Escherichia coli, GI1787272, Length=184, Percent_Identity=29.8913043478261, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020945 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 22422; Mature: 22422

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMPIPNRDAVALSARTLGALFSYAPNSAEIAPLVAAFQDGSWQQQWPFPVAAPLASGFA
CCCCCCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCHH
ASAEETLPEAWQRLFIGPWALPAPPWGSVWLDKESVLFGDSTLALRQWMRENGIALEADG
CCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEECCHHHHHHHHHHHCCEEEEECC
NEPEDHFGTVLLLAAWLCETEQDALFAQLLAWHLLPWSGRFLSVFVDHAAHPFYQALGQL
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHH
AQATLAQWQENLPIAVAQKPLYR
HHHHHHHHHHCCCEEECCCCCCC
>Mature Secondary Structure
MMMPIPNRDAVALSARTLGALFSYAPNSAEIAPLVAAFQDGSWQQQWPFPVAAPLASGFA
CCCCCCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCHH
ASAEETLPEAWQRLFIGPWALPAPPWGSVWLDKESVLFGDSTLALRQWMRENGIALEADG
CCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEECCHHHHHHHHHHHCCEEEEECC
NEPEDHFGTVLLLAAWLCETEQDALFAQLLAWHLLPWSGRFLSVFVDHAAHPFYQALGQL
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHH
AQATLAQWQENLPIAVAQKPLYR
HHHHHHHHHHCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]