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The map label for this gene is slyA [H]

Identifier: 238894501

GI number: 238894501

Start: 2398201

End: 2398632

Strand: Reverse

Name: slyA [H]

Synonym: KP1_2492

Alternate gene names: 238894501

Gene position: 2398632-2398201 (Counterclockwise)

Preceding gene: 238894502

Following gene: 238894500

Centisome position: 45.7

GC content: 59.49

Gene sequence:

>432_bases
ATGGACAATCGACAGCTTACCTTCTCTCATCTTTTATACCTCACCGCGCACCACTGGCGGCTGGCGGTCAATCGTCGGCT
GAAAAATCTCGGTCTCAGCCAGGCCAGCTGGGTGGCGGTAGCGTCCATCGCCCGCCACCAGCAGCCGCTGTCGCAAAGCG
AACTGGCGCAGGAGCTGGGGGTGGAGAGCCCGACCATTGTGCCGTTGATCCATCGTCTGGTCGCCCTCGGACTGGTTGAG
CGCGTCACCACCGCCAGCGACAAACGTAAGCGACTGCTGGTGGTCACCGACAAAGGGAAGGCCCTCTATGAACAGGTCAA
AACGGTGGCTGACGATCTGCGCGAAGAGATCCTGACGGCGATTACCCCACAGGAGCAGGAGCAAACCCAGCGGGTGCTGG
AAAAGCTATTGCGCGAAGTGGAGAAGAAATAA

Upstream 100 bases:

>100_bases
TAACGTACATACCGTTAACCAATTTCTATCTTTCATCTTGAACTCCGGCGGTTATCCGGCATAAAATCGTTAGAGCTCTA
ACGATATTGACAGACGACCT

Downstream 100 bases:

>100_bases
TGCCCCGTCGCCAGGATAACCCCTACGCCCCGCATGACTGGGCGCCGCATGAAAAACCGGCTCTGCTCGGTTCGCCGTCG
ACGCCGCTGCACAGTCCGGC

Product: putative MarR family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MDNRQLTFSHLLYLTAHHWRLAVNRRLKNLGLSQASWVAVASIARHQQPLSQSELAQELGVESPTIVPLIHRLVALGLVE
RVTTASDKRKRLLVVTDKGKALYEQVKTVADDLREEILTAITPQEQEQTQRVLEKLLREVEKK

Sequences:

>Translated_143_residues
MDNRQLTFSHLLYLTAHHWRLAVNRRLKNLGLSQASWVAVASIARHQQPLSQSELAQELGVESPTIVPLIHRLVALGLVE
RVTTASDKRKRLLVVTDKGKALYEQVKTVADDLREEILTAITPQEQEQTQRVLEKLLREVEKK
>Mature_143_residues
MDNRQLTFSHLLYLTAHHWRLAVNRRLKNLGLSQASWVAVASIARHQQPLSQSELAQELGVESPTIVPLIHRLVALGLVE
RVTTASDKRKRLLVVTDKGKALYEQVKTVADDLREEILTAITPQEQEQTQRVLEKLLREVEKK

Specific function: Transcription regulator that can both activate or repress expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081950, Length=120, Percent_Identity=37.5, Blast_Score=75, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16319; Mature: 16319

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNRQLTFSHLLYLTAHHWRLAVNRRLKNLGLSQASWVAVASIARHQQPLSQSELAQELG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC
VESPTIVPLIHRLVALGLVERVTTASDKRKRLLVVTDKGKALYEQVKTVADDLREEILTA
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
ITPQEQEQTQRVLEKLLREVEKK
CCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDNRQLTFSHLLYLTAHHWRLAVNRRLKNLGLSQASWVAVASIARHQQPLSQSELAQELG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC
VESPTIVPLIHRLVALGLVERVTTASDKRKRLLVVTDKGKALYEQVKTVADDLREEILTA
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
ITPQEQEQTQRVLEKLLREVEKK
CCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA