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The map label for this gene is ydgJ [H]

Identifier: 238894457

GI number: 238894457

Start: 2348927

End: 2350072

Strand: Reverse

Name: ydgJ [H]

Synonym: KP1_2447

Alternate gene names: 238894457

Gene position: 2350072-2348927 (Counterclockwise)

Preceding gene: 238894458

Following gene: 238894456

Centisome position: 44.78

GC content: 63.09

Gene sequence:

>1146_bases
TTGATCGTCCCTGGGCTGAGCTGGGGGATGATCCCGTCCTCTCTGTACATATTGCTGACGCTTAACAACGTGGAGAACCT
GATGAGTAACAACACGATAAATATCGCCCTGATTGGCTACGGATTCGTCGGTAAGACCTTCCACGCGCCGCTTATCCGTT
CGGTGCCGGGGCTGAACCTGGCGTTCGTCGCTTCCCGCGATGAAGAGAAGGTCAAACGCGACCTGCCGGACGTCACGGTG
ATCGCCTCCCCGGAAGCAGCGGTCCAGCATCCGGACGTTGACCTGGTGGTCATCGCCTCCCCTAACGCCACGCACGCCCC
GCTGGCCCGCCTGGCGCTGAACGCCGGCAAACATGTGGTGGTGGATAAGCCCTTTACCCTCGATATGCAGGAGGCCCGGG
AGCTGATCGCCCTGGCGGAGGAGAAACAGCGTCTGCTCTCCGTCTTCCATAACCGCCGCTGGGACAGCGACTATCTCGGG
ATCCGTCAGGTGATTGAGCAAGGCACCCTCGGCGCGGTGAAACACTTCGAGTCGCATTTCGACCGCTTCCGCCCGGAAGT
CCGCGTCCGCTGGCGCGAGCAGAACGTCCCGGGCAGCGGCTTGTGGTTCGACCTGGGGCCGCACCTGATCGACCAGGCGC
TGCAGCTATTTGGTTTGCCGCAGTCGGTGCAAGGTAACATAGCCACCCTGCGCGACGGCGCGGAGATCAACGACTGGGCG
CATGTGGTATTAAACTACCCGGCGCATAAAGTGATCCTGCACTGCAGCATGCTGGTCGCGGGCGGCTCGTCGCGCTTCAC
CGTGCACGGCGATAAAGGTAGCGTTATCAAAGCGCGGGCCGACCAACAGGAGAGCCAGCTGCTGGCGGGCGTGGTACCGG
GCAGCGCCGGCTGGGGCCAGGATGACGACCCGCTGGTTATCTATGATGCCTCGCTGCAGGCCCACGCGCAGGCTACCCCG
CAGGGCGATCAGCGCCAGTACTATATGCTGATCCGCGATGCGCTGAAGGGCCAGATCGCCAATCCGGTGCCGCCGGTGGA
AGCGCTGGCGGTGATGGCCGTTCTGGAAGCGGCGGTGCGCTCTGCTGAAAGTGGTATGGTGCAGACCCTGGACCTGTCCG
ACGACGAGCGCAACACGCTGCGCTAA

Upstream 100 bases:

>100_bases
GCCGCCAGCGCCGAGCACTGGCTGGTGGCGGACCATACCAAACTCAACCGCTGCGAACCGTGGCGGGTGGCCGGGCTCAG
CGACATTCACCATCTTTTTC

Downstream 100 bases:

>100_bases
TCCGCCCTGTTCTCCGGTTACCTGCGCGGCCCGCAGGTAACCGCTACTTTTGCGCCACCTTAGAAAAAATCACTATCTAT
CCGCAGATTAACATTGCTTT

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MIVPGLSWGMIPSSLYILLTLNNVENLMSNNTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTV
IASPEAAVQHPDVDLVVIASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLSVFHNRRWDSDYLG
IRQVIEQGTLGAVKHFESHFDRFRPEVRVRWREQNVPGSGLWFDLGPHLIDQALQLFGLPQSVQGNIATLRDGAEINDWA
HVVLNYPAHKVILHCSMLVAGGSSRFTVHGDKGSVIKARADQQESQLLAGVVPGSAGWGQDDDPLVIYDASLQAHAQATP
QGDQRQYYMLIRDALKGQIANPVPPVEALAVMAVLEAAVRSAESGMVQTLDLSDDERNTLR

Sequences:

>Translated_381_residues
MIVPGLSWGMIPSSLYILLTLNNVENLMSNNTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTV
IASPEAAVQHPDVDLVVIASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLSVFHNRRWDSDYLG
IRQVIEQGTLGAVKHFESHFDRFRPEVRVRWREQNVPGSGLWFDLGPHLIDQALQLFGLPQSVQGNIATLRDGAEINDWA
HVVLNYPAHKVILHCSMLVAGGSSRFTVHGDKGSVIKARADQQESQLLAGVVPGSAGWGQDDDPLVIYDASLQAHAQATP
QGDQRQYYMLIRDALKGQIANPVPPVEALAVMAVLEAAVRSAESGMVQTLDLSDDERNTLR
>Mature_381_residues
MIVPGLSWGMIPSSLYILLTLNNVENLMSNNTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTV
IASPEAAVQHPDVDLVVIASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLSVFHNRRWDSDYLG
IRQVIEQGTLGAVKHFESHFDRFRPEVRVRWREQNVPGSGLWFDLGPHLIDQALQLFGLPQSVQGNIATLRDGAEINDWA
HVVLNYPAHKVILHCSMLVAGGSSRFTVHGDKGSVIKARADQQESQLLAGVVPGSAGWGQDDDPLVIYDASLQAHAQATP
QGDQRQYYMLIRDALKGQIANPVPPVEALAVMAVLEAAVRSAESGMVQTLDLSDDERNTLR

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=339, Percent_Identity=51.3274336283186, Blast_Score=346, Evalue=1e-96,
Organism=Escherichia coli, GI1789848, Length=343, Percent_Identity=33.5276967930029, Blast_Score=175, Evalue=6e-45,
Organism=Escherichia coli, GI1787574, Length=231, Percent_Identity=25.1082251082251, Blast_Score=72, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24581117, Length=131, Percent_Identity=32.824427480916, Blast_Score=68, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 41761; Mature: 41761

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVPGLSWGMIPSSLYILLTLNNVENLMSNNTINIALIGYGFVGKTFHAPLIRSVPGLNL
CCCCCCCCCCCCCCEEEEEEECCHHHHHCCCCEEEEEEEECCCCCHHCCHHHHCCCCCCE
AFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLARLALNAGKHVV
EEEECCCHHHHHHCCCCEEEEECCCHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEE
VDKPFTLDMQEARELIALAEEKQRLLSVFHNRRWDSDYLGIRQVIEQGTLGAVKHFESHF
ECCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
DRFRPEVRVRWREQNVPGSGLWFDLGPHLIDQALQLFGLPQSVQGNIATLRDGAEINDWA
HHCCCCEEEEEEECCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEE
HVVLNYPAHKVILHCSMLVAGGSSRFTVHGDKGSVIKARADQQESQLLAGVVPGSAGWGQ
EEEECCCHHHHHHHHHHHEECCCCEEEEECCCCCEEEECCCCHHHHEEEEECCCCCCCCC
DDDPLVIYDASLQAHAQATPQGDQRQYYMLIRDALKGQIANPVPPVEALAVMAVLEAAVR
CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
SAESGMVQTLDLSDDERNTLR
HHCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MIVPGLSWGMIPSSLYILLTLNNVENLMSNNTINIALIGYGFVGKTFHAPLIRSVPGLNL
CCCCCCCCCCCCCCEEEEEEECCHHHHHCCCCEEEEEEEECCCCCHHCCHHHHCCCCCCE
AFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLARLALNAGKHVV
EEEECCCHHHHHHCCCCEEEEECCCHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEE
VDKPFTLDMQEARELIALAEEKQRLLSVFHNRRWDSDYLGIRQVIEQGTLGAVKHFESHF
ECCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
DRFRPEVRVRWREQNVPGSGLWFDLGPHLIDQALQLFGLPQSVQGNIATLRDGAEINDWA
HHCCCCEEEEEEECCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEE
HVVLNYPAHKVILHCSMLVAGGSSRFTVHGDKGSVIKARADQQESQLLAGVVPGSAGWGQ
EEEECCCHHHHHHHHHHHEECCCCEEEEECCCCCEEEECCCCHHHHEEEEECCCCCCCCC
DDDPLVIYDASLQAHAQATPQGDQRQYYMLIRDALKGQIANPVPPVEALAVMAVLEAAVR
CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
SAESGMVQTLDLSDDERNTLR
HHCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]