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The map label for this gene is yqhC [H]

Identifier: 238894438

GI number: 238894438

Start: 2331464

End: 2332342

Strand: Direct

Name: yqhC [H]

Synonym: KP1_2426

Alternate gene names: 238894438

Gene position: 2331464-2332342 (Clockwise)

Preceding gene: 238894436

Following gene: 238894441

Centisome position: 44.42

GC content: 65.64

Gene sequence:

>879_bases
ATGCGCGACGCTCTGTTCGATCTCTGCCGCCGGTTTGCCGATGCTCATGTCGATAGCAGCGGGGTGGCAGTTACCCCGGT
TCCCGGTATTACTCTGGTGCGGGCCCTGCATCCTGGTGACCTGCAGGCGGCTATCGCCAGGCCGCTGGTGGCCATGCTGC
TCCAGGGGCGTAAGAGCGTGACCACCGGCCTGGCAAGCTTTGACTATGGCCCGGGCGAGGCGATGGTGATCGCCGCGGAT
GTTCCCACTACCAGCCTGATCACCGAGGCCAGTCAGCGTTTTCCCTATTACGCGCTGGTGCTGGAGCTGGACCTGGCTAT
CCTGCGCGAGCTGCAGGAGGCCGGGCCGTCAGGGCCGGATGAGGCGCCCCGCGTTGGTATCGAACCGATGAACGCCGATG
TGACGGATGCCGCTTACCGGCTGGCAAGGCTGTTTGATCAACCGGGGGCGCTGGCGGTGCTGGGGGAAGGTCTGCGGCGG
GAGCTGCATTACTGGCTGTTGCAGAGTGTCCATGGGCCGGCCATCCGGGCGCTGGGCGCCGTAGACAGCCATTCGGCGCG
GATCCGTCGGGCGGTGGCGATGCTGCGCCGGGATTTTATGCAGCCAGTCAGCGTCGACGCGCTGGCCGACGCCGCCGGGA
TGAGCGTCTCTGTCTTTCACCGTCATTTCCGCGCCATGACCACGCTGTCGCCGCTGCAGTTTCAGAAGCAGTTACGCCTG
ATCCACGCCCGCCGCCTGATGCTGGCGGAAGGGATGAGTATTGCGCAGGCTGCCGGGGAGGTGGGCTATATCAGCGTGTC
GCAGTTCACCCGGGAATACGCTCGCCTGTATGGCGCGCCGCCGGGCCGCGATCGTCGACGGGAAAAAATGAGCGCCTGA

Upstream 100 bases:

>100_bases
TGCCCAATCCTTGTTATTTTTTGCCCATTTCTCTCCGTTCACTCCCTTTTGCCGGGAAATAGCGCATACTCAGGCTTTAA
AACTTGCCTGAAAGGATCTT

Downstream 100 bases:

>100_bases
CCTGGCGCGCGGGCTGCCGGTAGCTCATCCCTGAGCCTGACGCCGGTGCTTTATTCCGCGATTTTCGCCGTGATATGCAC
TTTGTTGCCCATTCGCGCTT

Product: putative AraC-type regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MRDALFDLCRRFADAHVDSSGVAVTPVPGITLVRALHPGDLQAAIARPLVAMLLQGRKSVTTGLASFDYGPGEAMVIAAD
VPTTSLITEASQRFPYYALVLELDLAILRELQEAGPSGPDEAPRVGIEPMNADVTDAAYRLARLFDQPGALAVLGEGLRR
ELHYWLLQSVHGPAIRALGAVDSHSARIRRAVAMLRRDFMQPVSVDALADAAGMSVSVFHRHFRAMTTLSPLQFQKQLRL
IHARRLMLAEGMSIAQAAGEVGYISVSQFTREYARLYGAPPGRDRRREKMSA

Sequences:

>Translated_292_residues
MRDALFDLCRRFADAHVDSSGVAVTPVPGITLVRALHPGDLQAAIARPLVAMLLQGRKSVTTGLASFDYGPGEAMVIAAD
VPTTSLITEASQRFPYYALVLELDLAILRELQEAGPSGPDEAPRVGIEPMNADVTDAAYRLARLFDQPGALAVLGEGLRR
ELHYWLLQSVHGPAIRALGAVDSHSARIRRAVAMLRRDFMQPVSVDALADAAGMSVSVFHRHFRAMTTLSPLQFQKQLRL
IHARRLMLAEGMSIAQAAGEVGYISVSQFTREYARLYGAPPGRDRRREKMSA
>Mature_292_residues
MRDALFDLCRRFADAHVDSSGVAVTPVPGITLVRALHPGDLQAAIARPLVAMLLQGRKSVTTGLASFDYGPGEAMVIAAD
VPTTSLITEASQRFPYYALVLELDLAILRELQEAGPSGPDEAPRVGIEPMNADVTDAAYRLARLFDQPGALAVLGEGLRR
ELHYWLLQSVHGPAIRALGAVDSHSARIRRAVAMLRRDFMQPVSVDALADAAGMSVSVFHRHFRAMTTLSPLQFQKQLRL
IHARRLMLAEGMSIAQAAGEVGYISVSQFTREYARLYGAPPGRDRRREKMSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=291, Percent_Identity=29.8969072164948, Blast_Score=124, Evalue=1e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31840; Mature: 31840

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDALFDLCRRFADAHVDSSGVAVTPVPGITLVRALHPGDLQAAIARPLVAMLLQGRKSV
CCHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHH
TTGLASFDYGPGEAMVIAADVPTTSLITEASQRFPYYALVLELDLAILRELQEAGPSGPD
HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
EAPRVGIEPMNADVTDAAYRLARLFDQPGALAVLGEGLRRELHYWLLQSVHGPAIRALGA
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
VDSHSARIRRAVAMLRRDFMQPVSVDALADAAGMSVSVFHRHFRAMTTLSPLQFQKQLRL
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
IHARRLMLAEGMSIAQAAGEVGYISVSQFTREYARLYGAPPGRDRRREKMSA
HHHHHHHHHHCCHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHCCC
>Mature Secondary Structure
MRDALFDLCRRFADAHVDSSGVAVTPVPGITLVRALHPGDLQAAIARPLVAMLLQGRKSV
CCHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHH
TTGLASFDYGPGEAMVIAADVPTTSLITEASQRFPYYALVLELDLAILRELQEAGPSGPD
HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
EAPRVGIEPMNADVTDAAYRLARLFDQPGALAVLGEGLRRELHYWLLQSVHGPAIRALGA
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
VDSHSARIRRAVAMLRRDFMQPVSVDALADAAGMSVSVFHRHFRAMTTLSPLQFQKQLRL
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
IHARRLMLAEGMSIAQAAGEVGYISVSQFTREYARLYGAPPGRDRRREKMSA
HHHHHHHHHHCCHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]