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The map label for this gene is yjgJ [H]

Identifier: 238894436

GI number: 238894436

Start: 2329916

End: 2330545

Strand: Direct

Name: yjgJ [H]

Synonym: KP1_2424

Alternate gene names: 238894436

Gene position: 2329916-2330545 (Clockwise)

Preceding gene: 238894434

Following gene: 238894438

Centisome position: 44.39

GC content: 63.97

Gene sequence:

>630_bases
ATGCTGCGGCTAAACAGGCTGTCAAGGATTAATATAGTGACCACTACAAAACCAGGGCGCACTCCGGGACGTCCCCGCCA
GTTTGATGCGGAACAGGCCATTGAAACGGCGCAACGCCTCTTCCACGCGCGAGGCTACGACGCGGTGAGCGTGGCCGATC
TGACCCAGGCTTTCGGCATCAACCCCCCGAGCTTTTATGCCGCTTTTGGCAGTAAGCTCGGGCTGTATACCCGCGTCCTG
CAGCGCTACAGCCAGATCGGGGCCATTCCCATCGATGCCCTGCTGCGAGACGACCAGCCGGTGGCGGCGTCGCTCATCGC
CGTACTGCAGGAGGCGGCTCGCCGCTATGTGGCCGATCCGGCCGCCGCCGGCTGCCTGGTGCTGGAGGGGGGACATTGTC
AGGATGCTGATGCCCGGGTGGCGGCAGGCGAATGGCATGCTGCGGCAAGAGCCAAAATCCAGCAGTATATCGCCCGCCAT
CGCCCACAGGACGCGCTGCGGGTGACTGACTATATGGATACGCTGATGCTTGGCCTGTCGGCGAAAGCGCGGGAAGGGGA
TAGTCTGCCGCGTCTTCTGGAGACCGTGCGGCTGGCAGGCCTGGCGCTGGAGCGCATCCTGCCAGCCTGA

Upstream 100 bases:

>100_bases
CGCCGCGCCAATTCCCCGACTCCCGCCTAAAACCAGCACTGATTTGTTGTGAAACGCTGTCATATCCCACACCTCATGAT
ATTGTAGTGATGATTACAAT

Downstream 100 bases:

>100_bases
GTCGTCAGATGGTTTGTCCGCCCGACACCTCGATCCGCTGGGCGGTTACCCAGCGGTTATCGTCGCGTAGCAGGCTGGCG
ATCATCGGCCCAATATCCTC

Product: putative TetR-family trancriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MLRLNRLSRINIVTTTKPGRTPGRPRQFDAEQAIETAQRLFHARGYDAVSVADLTQAFGINPPSFYAAFGSKLGLYTRVL
QRYSQIGAIPIDALLRDDQPVAASLIAVLQEAARRYVADPAAAGCLVLEGGHCQDADARVAAGEWHAAARAKIQQYIARH
RPQDALRVTDYMDTLMLGLSAKAREGDSLPRLLETVRLAGLALERILPA

Sequences:

>Translated_209_residues
MLRLNRLSRINIVTTTKPGRTPGRPRQFDAEQAIETAQRLFHARGYDAVSVADLTQAFGINPPSFYAAFGSKLGLYTRVL
QRYSQIGAIPIDALLRDDQPVAASLIAVLQEAARRYVADPAAAGCLVLEGGHCQDADARVAAGEWHAAARAKIQQYIARH
RPQDALRVTDYMDTLMLGLSAKAREGDSLPRLLETVRLAGLALERILPA
>Mature_209_residues
MLRLNRLSRINIVTTTKPGRTPGRPRQFDAEQAIETAQRLFHARGYDAVSVADLTQAFGINPPSFYAAFGSKLGLYTRVL
QRYSQIGAIPIDALLRDDQPVAASLIAVLQEAARRYVADPAAAGCLVLEGGHCQDADARVAAGEWHAAARAKIQQYIARH
RPQDALRVTDYMDTLMLGLSAKAREGDSLPRLLETVRLAGLALERILPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082397, Length=195, Percent_Identity=54.8717948717949, Blast_Score=209, Evalue=1e-55,
Organism=Escherichia coli, GI87081833, Length=200, Percent_Identity=29.5, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22815; Mature: 22815

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLNRLSRINIVTTTKPGRTPGRPRQFDAEQAIETAQRLFHARGYDAVSVADLTQAFGI
CCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
NPPSFYAAFGSKLGLYTRVLQRYSQIGAIPIDALLRDDQPVAASLIAVLQEAARRYVADP
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
AAAGCLVLEGGHCQDADARVAAGEWHAAARAKIQQYIARHRPQDALRVTDYMDTLMLGLS
CCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
AKAREGDSLPRLLETVRLAGLALERILPA
CCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLRLNRLSRINIVTTTKPGRTPGRPRQFDAEQAIETAQRLFHARGYDAVSVADLTQAFGI
CCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
NPPSFYAAFGSKLGLYTRVLQRYSQIGAIPIDALLRDDQPVAASLIAVLQEAARRYVADP
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
AAAGCLVLEGGHCQDADARVAAGEWHAAARAKIQQYIARHRPQDALRVTDYMDTLMLGLS
CCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
AKAREGDSLPRLLETVRLAGLALERILPA
CCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]