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The map label for this gene is ybiX [C]

Identifier: 238894305

GI number: 238894305

Start: 2193826

End: 2194503

Strand: Reverse

Name: ybiX [C]

Synonym: KP1_2283

Alternate gene names: 238894305

Gene position: 2194503-2193826 (Counterclockwise)

Preceding gene: 238894306

Following gene: 238894303

Centisome position: 41.81

GC content: 62.24

Gene sequence:

>678_bases
ATGATGTATCACATTCCTGACGTGCTATCGACAGACCAGGTGGCGGAATTTACCCGGCAGCTGGCGCAGGCCGAGTGGGT
CGACGGGCGGGTTACGGTGGGTAGCCAGGGGGCGGCCGTCAAACAGAACCAGCAGATCGATACCCGAACGCCGCTGTATG
CCCGCCTGCAGGCCGCTGTGCTCGATATGCTGCGCGGCCATCCGCAGTTTTTTTCCGCCGCGCTGCCGCGGACGATTTCC
GCGCCGTTGTTTAACCGCTATGGGCCAGGGGAGACCTATGGTTTTCACGTCGATGGCGCCGTTCGCCAGAACGGCGAGGC
GGGCTGGATGCGCACTGATCTGTCAGCGACGCTGTTCCTTTGCGATCCGGAGAGCTATGAGGGTGGCGAACTGGTGATTG
AAGACACCTATGGCCAACATCGGGTGAAGCTCCCGGCCGGGCATCTGGTGCTCTATCCCGCCAGCAGCCTGCACTGCGTC
ACCCCGGTCACCCGCGGCGTCCGCCAGGCCTCTTTCCTGTGGATCCAGTCGATGGTCCGCGACGATAAGCAGCGTGCGAT
GCTTTACGACCTGGACCGCACCATCCAGTCTCTGAAGGCCCGCTTTGGCGACGGAGAAGAGGTCCTCTCCCTGCTCAACA
TGTATCACAACCTGCTGCGCCAGTGGACGGAAGTGTGA

Upstream 100 bases:

>100_bases
TCATCCGGGCGAACCCCGGACCTTTATGCTGACGGCGAACGTCCATTTCTGAGTCTGCGCGTGGGGCCGTTGCGCCCCAC
CTTTTAGAGAGAACACCGCG

Downstream 100 bases:

>100_bases
TCCGCTGTTGATGACAGAGGCTTGCGGCAGACAGGTGTGACGAGACAATGAACTGGCCATCCGTTGGCCAGTTTACAGAA
GAATTTAGAACCGATAGCCT

Product: putative hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MMYHIPDVLSTDQVAEFTRQLAQAEWVDGRVTVGSQGAAVKQNQQIDTRTPLYARLQAAVLDMLRGHPQFFSAALPRTIS
APLFNRYGPGETYGFHVDGAVRQNGEAGWMRTDLSATLFLCDPESYEGGELVIEDTYGQHRVKLPAGHLVLYPASSLHCV
TPVTRGVRQASFLWIQSMVRDDKQRAMLYDLDRTIQSLKARFGDGEEVLSLLNMYHNLLRQWTEV

Sequences:

>Translated_225_residues
MMYHIPDVLSTDQVAEFTRQLAQAEWVDGRVTVGSQGAAVKQNQQIDTRTPLYARLQAAVLDMLRGHPQFFSAALPRTIS
APLFNRYGPGETYGFHVDGAVRQNGEAGWMRTDLSATLFLCDPESYEGGELVIEDTYGQHRVKLPAGHLVLYPASSLHCV
TPVTRGVRQASFLWIQSMVRDDKQRAMLYDLDRTIQSLKARFGDGEEVLSLLNMYHNLLRQWTEV
>Mature_225_residues
MMYHIPDVLSTDQVAEFTRQLAQAEWVDGRVTVGSQGAAVKQNQQIDTRTPLYARLQAAVLDMLRGHPQFFSAALPRTIS
APLFNRYGPGETYGFHVDGAVRQNGEAGWMRTDLSATLFLCDPESYEGGELVIEDTYGQHRVKLPAGHLVLYPASSLHCV
TPVTRGVRQASFLWIQSMVRDDKQRAMLYDLDRTIQSLKARFGDGEEVLSLLNMYHNLLRQWTEV

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain [H]

Homologues:

Organism=Escherichia coli, GI87081784, Length=225, Percent_Identity=72.8888888888889, Blast_Score=356, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005123
- InterPro:   IPR006620 [H]

Pfam domain/function: PF03171 2OG-FeII_Oxy [H]

EC number: 1.14.11.- [C]

Molecular weight: Translated: 25358; Mature: 25358

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMYHIPDVLSTDQVAEFTRQLAQAEWVDGRVTVGSQGAAVKQNQQIDTRTPLYARLQAAV
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
LDMLRGHPQFFSAALPRTISAPLFNRYGPGETYGFHVDGAVRQNGEAGWMRTDLSATLFL
HHHHCCCHHHHHHHCCHHHCCHHHHCCCCCCCEEEEECCHHHCCCCCCCEEECCCEEEEE
CDPESYEGGELVIEDTYGQHRVKLPAGHLVLYPASSLHCVTPVTRGVRQASFLWIQSMVR
ECCCCCCCCEEEEECCCCCEEEECCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHH
DDKQRAMLYDLDRTIQSLKARFGDGEEVLSLLNMYHNLLRQWTEV
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMYHIPDVLSTDQVAEFTRQLAQAEWVDGRVTVGSQGAAVKQNQQIDTRTPLYARLQAAV
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
LDMLRGHPQFFSAALPRTISAPLFNRYGPGETYGFHVDGAVRQNGEAGWMRTDLSATLFL
HHHHCCCHHHHHHHCCHHHCCHHHHCCCCCCCEEEEECCHHHCCCCCCCEEECCCEEEEE
CDPESYEGGELVIEDTYGQHRVKLPAGHLVLYPASSLHCVTPVTRGVRQASFLWIQSMVR
ECCCCCCCCEEEEECCCCCEEEECCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHH
DDKQRAMLYDLDRTIQSLKARFGDGEEVLSLLNMYHNLLRQWTEV
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA