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The map label for this gene is ydeA [H]

Identifier: 238894240

GI number: 238894240

Start: 2129992

End: 2131251

Strand: Reverse

Name: ydeA [H]

Synonym: KP1_2209

Alternate gene names: 238894240

Gene position: 2131251-2129992 (Counterclockwise)

Preceding gene: 238894242

Following gene: 238894238

Centisome position: 40.61

GC content: 65.32

Gene sequence:

>1260_bases
GTGCACCGCGCGGAACGCTCCTTTCCTAAGGATACGCCTGATATGAAAGAGATTGCTTTACCCCTCCACCCGGCGCCGGC
GCGCGTCTGGATTGCCGTCGTTGCGCTCGGGATCTGCGCCTTTTCGATCGTCACCAGCGAACTGGCGCCGGTGGGCATGC
TCAGCGCCCTGGCGGCGGATTTTCACCAGACGGAATCCGGCGTGGGCCTCGCCGTCACCGCCTATAGCTGGGTAGGCGCC
CTGGCGGCTCTGCTTTCCGGCGCAATGCCGGTGCGTATTTCCCGCAAGGCGCTGCTGGTCGGGCTGATGCTGATCCTCGC
GCTTTCCTGCCTCGCCGCAACCCGGTCTTATTCGATGTTCGCCCTGATGAGCGCCCGCATGATTGGCGCCCTGGCGCATG
GCGCCTTCTGGGCCTTAATTGGCATTGTCGCCGCGCAGCTGGTGCCGCCGCACCGGCTGGGGCTGGCCACGGCGATGATT
TTTGGCGGCGTGTCAGCGGCAAGCGTAGTGGGGGTGCCGCTGGCGAGCTTTATCGCCACCCTGGCGGGCTGGCGACTCGC
GTTTATGTCGATGGCCTTGCTGTCACTAGCCGCCGCTGCGGTGCTGTGCTCGACGCTGCCCCCGCTGGCCGCCCCTGCCC
CCGTCAGGCTGCGTGTTTATCGCGATATCTTCCGCAATCCGCTGCTCGGTGGCCTGTATGGCGCCACGGCCTGCATCATT
ACCGCTCACTTTGCCGCCTTCACCTACATTGAACCACTGCTGATAAATCTGCAGGGAGTCCCGGCGACCGCTCTCTCCGG
CCTGCTGCTGCTGTCAGGGGTTTCCGGGCTGCTGGGTAACGTTATCGCGGGTAAGCTTATCGATCGTCATCTGAAGGGGC
TGATTTTCGCTGCGCTGCTGCTGAGCGGGGGCGCGCTGGCGCTCCTTGGCGCCGCCCGTCTTGCGCCACTGCCGTTCTGT
TTTAGCGGGCTACTGTTAGCCCTGTGGGGCGCCGGCATCGCGATTGTGTTCGTCGGCTTACAGACCTGGCTGCTGCGCAG
CGCGGGCGCTGTCGCCCAGCCGGCGTCAGCCATTTATGTGGCCATTTTTAATGCCGCCATCGGCACCGGGGCGTTTGTCG
GCGGCCAGCTGATCGCCTCAGCTGGCCTGTCGGGAATGGTGTGGCTGGCGGCGGGGATCATGGTGGGCAGTACGCTGCTG
ATCGCCCTGCTGAAAGCGCCTCTGCCCGGTCAGGTCAGTGCGGCGACGGCAGGCGCTTAG

Upstream 100 bases:

>100_bases
TTCCGCTCTTTTTTATCATTTTCGCAGGGATGATACTGCACGCCATTCGCGGAGACAACCAGGCCATCCGGTCGCCTGCT
CTCTCCTCACCTGAACGTCC

Downstream 100 bases:

>100_bases
ATTTGCGCCAGCCCGCCGTCGACATAGATCTCCGCGGCGTTAATAAAGCTCGACTCATCCGACGCTAAAAATATCACCGT
CCGGCCAATCTCCTCCGGCT

Product: putative integral membrane transport protein

Products: arabinose [Periplasm]; Proton [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MHRAERSFPKDTPDMKEIALPLHPAPARVWIAVVALGICAFSIVTSELAPVGMLSALAADFHQTESGVGLAVTAYSWVGA
LAALLSGAMPVRISRKALLVGLMLILALSCLAATRSYSMFALMSARMIGALAHGAFWALIGIVAAQLVPPHRLGLATAMI
FGGVSAASVVGVPLASFIATLAGWRLAFMSMALLSLAAAAVLCSTLPPLAAPAPVRLRVYRDIFRNPLLGGLYGATACII
TAHFAAFTYIEPLLINLQGVPATALSGLLLLSGVSGLLGNVIAGKLIDRHLKGLIFAALLLSGGALALLGAARLAPLPFC
FSGLLLALWGAGIAIVFVGLQTWLLRSAGAVAQPASAIYVAIFNAAIGTGAFVGGQLIASAGLSGMVWLAAGIMVGSTLL
IALLKAPLPGQVSAATAGA

Sequences:

>Translated_419_residues
MHRAERSFPKDTPDMKEIALPLHPAPARVWIAVVALGICAFSIVTSELAPVGMLSALAADFHQTESGVGLAVTAYSWVGA
LAALLSGAMPVRISRKALLVGLMLILALSCLAATRSYSMFALMSARMIGALAHGAFWALIGIVAAQLVPPHRLGLATAMI
FGGVSAASVVGVPLASFIATLAGWRLAFMSMALLSLAAAAVLCSTLPPLAAPAPVRLRVYRDIFRNPLLGGLYGATACII
TAHFAAFTYIEPLLINLQGVPATALSGLLLLSGVSGLLGNVIAGKLIDRHLKGLIFAALLLSGGALALLGAARLAPLPFC
FSGLLLALWGAGIAIVFVGLQTWLLRSAGAVAQPASAIYVAIFNAAIGTGAFVGGQLIASAGLSGMVWLAAGIMVGSTLL
IALLKAPLPGQVSAATAGA
>Mature_419_residues
MHRAERSFPKDTPDMKEIALPLHPAPARVWIAVVALGICAFSIVTSELAPVGMLSALAADFHQTESGVGLAVTAYSWVGA
LAALLSGAMPVRISRKALLVGLMLILALSCLAATRSYSMFALMSARMIGALAHGAFWALIGIVAAQLVPPHRLGLATAMI
FGGVSAASVVGVPLASFIATLAGWRLAFMSMALLSLAAAAVLCSTLPPLAAPAPVRLRVYRDIFRNPLLGGLYGATACII
TAHFAAFTYIEPLLINLQGVPATALSGLLLLSGVSGLLGNVIAGKLIDRHLKGLIFAALLLSGGALALLGAARLAPLPFC
FSGLLLALWGAGIAIVFVGLQTWLLRSAGAVAQPASAIYVAIFNAAIGTGAFVGGQLIASAGLSGMVWLAAGIMVGSTLL
IALLKAPLPGQVSAATAGA

Specific function: Involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. SotB (TC 2.A.1.2) family [H]

Homologues:

Organism=Escherichia coli, GI1787808, Length=348, Percent_Identity=33.9080459770115, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI145693198, Length=387, Percent_Identity=30.2325581395349, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1787947, Length=338, Percent_Identity=29.2899408284024, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI1786595, Length=354, Percent_Identity=24.2937853107345, Blast_Score=92, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42565; Mature: 42565

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRAERSFPKDTPDMKEIALPLHPAPARVWIAVVALGICAFSIVTSELAPVGMLSALAAD
CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FHQTESGVGLAVTAYSWVGALAALLSGAMPVRISRKALLVGLMLILALSCLAATRSYSMF
HHHCCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALMSARMIGALAHGAFWALIGIVAAQLVPPHRLGLATAMIFGGVSAASVVGVPLASFIAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LAGWRLAFMSMALLSLAAAAVLCSTLPPLAAPAPVRLRVYRDIFRNPLLGGLYGATACII
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
TAHFAAFTYIEPLLINLQGVPATALSGLLLLSGVSGLLGNVIAGKLIDRHLKGLIFAALL
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSGGALALLGAARLAPLPFCFSGLLLALWGAGIAIVFVGLQTWLLRSAGAVAQPASAIYV
HCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
AIFNAAIGTGAFVGGQLIASAGLSGMVWLAAGIMVGSTLLIALLKAPLPGQVSAATAGA
HHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MHRAERSFPKDTPDMKEIALPLHPAPARVWIAVVALGICAFSIVTSELAPVGMLSALAAD
CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FHQTESGVGLAVTAYSWVGALAALLSGAMPVRISRKALLVGLMLILALSCLAATRSYSMF
HHHCCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALMSARMIGALAHGAFWALIGIVAAQLVPPHRLGLATAMIFGGVSAASVVGVPLASFIAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LAGWRLAFMSMALLSLAAAAVLCSTLPPLAAPAPVRLRVYRDIFRNPLLGGLYGATACII
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
TAHFAAFTYIEPLLINLQGVPATALSGLLLLSGVSGLLGNVIAGKLIDRHLKGLIFAALL
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSGGALALLGAARLAPLPFCFSGLLLALWGAGIAIVFVGLQTWLLRSAGAVAQPASAIYV
HCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
AIFNAAIGTGAFVGGQLIASAGLSGMVWLAAGIMVGSTLLIALLKAPLPGQVSAATAGA
HHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: arabinose [Cytoplasm]; Proton [Periplasm] [C]

Specific reaction: arabinose [Cytoplasm] + Proton [Periplasm] = arabinose [Periplasm] + Proton [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA