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The map label for this gene is yhjC [H]

Identifier: 238894238

GI number: 238894238

Start: 2128174

End: 2129079

Strand: Reverse

Name: yhjC [H]

Synonym: KP1_2207

Alternate gene names: 238894238

Gene position: 2129079-2128174 (Counterclockwise)

Preceding gene: 238894240

Following gene: 238894235

Centisome position: 40.57

GC content: 62.14

Gene sequence:

>906_bases
ATGGACCGGTTTTCAGCTCTCAAAGCCTTCACTCGCGTTGTCGAAGCCGGCAGCTTTACCCGCGCCGCGGACTCGCTGAA
TATGCCCAACGCCACCCTCAGCAAAACCATTCAGCAACTGGAGGCGCATCTTGGGGTTTCCCTCCTGCAGCGCACCACGC
GGCGTATTACCGTGACGCCGGAAGGACGGGAGTACTATGAAAAAGCCCGCTGTCTGCTGGAAGACCTGGAAGAGATCGAC
GCGTCTTTCAATACCGCCCGCAATAAGCCGAAGGGCCATCTACGGATCGCCATCGGCGGGTCGACCGCGTGCGATGTGCT
GATCCCGCTGCTGGCGGACTTTATGACCTCCTGGCCGGATATCCGTATCGATTTGCAGGTGGCCGATAAGCCCGCGGACC
TCATCAGCGGCAATATTGACTGCGCCATCCGCGGCGGTCCGATGGAAGACTCGACGCTGATCGCCCGTAAAATCGGCGAG
GCGACGCTGGTCACCTGCGCCACCCCTGGCTATCTTCAGCGCTACGGCACCCCCGCCTCGCCGGATGAACTACATCATGG
CCACCGGCTCATCAGCTATCTGTCGCCGGCCAGCGGCAGAGCGTTTCCGTTTCGCTTTACGCGTCACGGCGTCAGCACCG
AGCTGAAGACAGAGCCCCATCTCGGCATCAATGAGAGCAACGCGCATATTGCCGCCGGCGAGGCCGGCTTAGGCATTGTG
CAGACCTTTACCTATTCGCTGAAACCGGCGCTGGCGAGCGGCGAACTGGTGGAGATCCTCAGCGCCTGGCGCCCGGCCCC
CTATCCTTTTCACGTTGTCTATGCCCGGCACCGGCACGTCCCGCCCCGGCTCCGCGTCTTTATTGACTGGCTGGCGGCGG
TTTTTCCGGCCGCGGTGCAGGGATAG

Upstream 100 bases:

>100_bases
GCACTGTAATCGTCCCGGCGAGGCGGAAAAATGGCCTAATCTGAAAAACACTCTTCCCCTCGGTGGATAATGACCTCCAG
TAACCAGGATAAAGCGAATA

Downstream 100 bases:

>100_bases
CGCGCGTTATCTGACGCGGAGCAGGTCGCCGTATCGCGTGGTGTAGCGCGGCGAGAGCATCTCTCGCTTCATCTGCCACT
GCTGCTGGATCCCCTGGCCG

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDRFSALKAFTRVVEAGSFTRAADSLNMPNATLSKTIQQLEAHLGVSLLQRTTRRITVTPEGREYYEKARCLLEDLEEID
ASFNTARNKPKGHLRIAIGGSTACDVLIPLLADFMTSWPDIRIDLQVADKPADLISGNIDCAIRGGPMEDSTLIARKIGE
ATLVTCATPGYLQRYGTPASPDELHHGHRLISYLSPASGRAFPFRFTRHGVSTELKTEPHLGINESNAHIAAGEAGLGIV
QTFTYSLKPALASGELVEILSAWRPAPYPFHVVYARHRHVPPRLRVFIDWLAAVFPAAVQG

Sequences:

>Translated_301_residues
MDRFSALKAFTRVVEAGSFTRAADSLNMPNATLSKTIQQLEAHLGVSLLQRTTRRITVTPEGREYYEKARCLLEDLEEID
ASFNTARNKPKGHLRIAIGGSTACDVLIPLLADFMTSWPDIRIDLQVADKPADLISGNIDCAIRGGPMEDSTLIARKIGE
ATLVTCATPGYLQRYGTPASPDELHHGHRLISYLSPASGRAFPFRFTRHGVSTELKTEPHLGINESNAHIAAGEAGLGIV
QTFTYSLKPALASGELVEILSAWRPAPYPFHVVYARHRHVPPRLRVFIDWLAAVFPAAVQG
>Mature_301_residues
MDRFSALKAFTRVVEAGSFTRAADSLNMPNATLSKTIQQLEAHLGVSLLQRTTRRITVTPEGREYYEKARCLLEDLEEID
ASFNTARNKPKGHLRIAIGGSTACDVLIPLLADFMTSWPDIRIDLQVADKPADLISGNIDCAIRGGPMEDSTLIARKIGE
ATLVTCATPGYLQRYGTPASPDELHHGHRLISYLSPASGRAFPFRFTRHGVSTELKTEPHLGINESNAHIAAGEAGLGIV
QTFTYSLKPALASGELVEILSAWRPAPYPFHVVYARHRHVPPRLRVFIDWLAAVFPAAVQG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=38.7205387205387, Blast_Score=217, Evalue=8e-58,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=34.1463414634146, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=31.5254237288136, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=30.2405498281787, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=27.7777777777778, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=26.7796610169492, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=28.3333333333333, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1789173, Length=181, Percent_Identity=28.7292817679558, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=25.0847457627119, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788706, Length=300, Percent_Identity=25, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI157672245, Length=149, Percent_Identity=33.5570469798658, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787601, Length=175, Percent_Identity=25.7142857142857, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI87082132, Length=308, Percent_Identity=24.6753246753247, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787806, Length=174, Percent_Identity=27.0114942528736, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787879, Length=144, Percent_Identity=29.8611111111111, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32992; Mature: 32992

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFSALKAFTRVVEAGSFTRAADSLNMPNATLSKTIQQLEAHLGVSLLQRTTRRITVTP
CCHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECC
EGREYYEKARCLLEDLEEIDASFNTARNKPKGHLRIAIGGSTACDVLIPLLADFMTSWPD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC
IRIDLQVADKPADLISGNIDCAIRGGPMEDSTLIARKIGEATLVTCATPGYLQRYGTPAS
EEEEEEECCCCHHHHCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCCHHHHHCCCCCC
PDELHHGHRLISYLSPASGRAFPFRFTRHGVSTELKTEPHLGINESNAHIAAGEAGLGIV
HHHHHHHHHHHHHHCCCCCCCCCEEHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHH
QTFTYSLKPALASGELVEILSAWRPAPYPFHVVYARHRHVPPRLRVFIDWLAAVFPAAVQ
HHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
G
C
>Mature Secondary Structure
MDRFSALKAFTRVVEAGSFTRAADSLNMPNATLSKTIQQLEAHLGVSLLQRTTRRITVTP
CCHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECC
EGREYYEKARCLLEDLEEIDASFNTARNKPKGHLRIAIGGSTACDVLIPLLADFMTSWPD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC
IRIDLQVADKPADLISGNIDCAIRGGPMEDSTLIARKIGEATLVTCATPGYLQRYGTPAS
EEEEEEECCCCHHHHCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCCHHHHHCCCCCC
PDELHHGHRLISYLSPASGRAFPFRFTRHGVSTELKTEPHLGINESNAHIAAGEAGLGIV
HHHHHHHHHHHHHHCCCCCCCCCEEHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHH
QTFTYSLKPALASGELVEILSAWRPAPYPFHVVYARHRHVPPRLRVFIDWLAAVFPAAVQ
HHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]