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The map label for this gene is ycdX [C]

Identifier: 238894093

GI number: 238894093

Start: 1994114

End: 1994851

Strand: Direct

Name: ycdX [C]

Synonym: KP1_2044

Alternate gene names: 238894093

Gene position: 1994114-1994851 (Clockwise)

Preceding gene: 238894092

Following gene: 238894094

Centisome position: 37.99

GC content: 57.72

Gene sequence:

>738_bases
ATGTATCCCGTTGACCTGCACATGCATACCGTCGCCAGCACCCATGCCTACAGCACCCTGCACGATTATATTGCGGAAGC
AAAGCGTAAAGGGATCAAACTCTTCGCCATCACCGACCACGGCCCGGACATGGCGGATGCTCCGCACTACTGGCACTTCG
TTAATATGCGCATCTGGCCCCGCCTGGTAGACGGGGTGGGGATCCTGCGCGGTATTGAGTCGAATATTAAAAATATTGAA
GGCGAGATCGACTGTTCCGGACCGATGTTGACTTCCCTCGATCTGATCATCGCCGGATTTCATGAGCCGGTGTTTCCGCC
GCAGGATCGTGACACCCATACACAGGCGATGATAGCCGCGATGGCCAGCGGTAAAGTGCATATGATTAGCCATCCGGGTA
ATCCGAAATTCCCGGTGGATATCCCGGCGATTGCCGAAGCGGCGGCTCGCTACCAGGTGGCGCTGGAGATTAATAACTCC
TCGTTCGTATCATCGCGCGTGGGCAGTGAAGACAACTGCCGGGCCATCGCCGCCGCAGTGCGTGATGCCGGGGGATGGGT
GGCGCTGGGCTCGGACTCTCACACCGCCTTTACCCTCGGGGAGTTTACCGAATGCCGCAAGATCCTTGATGCGGTCGATT
TCCCGGAGGACAGGATCCTCAACGTTTCTCCGCGTCGCCTGCTTAACTTCCTCGAGTCGCGGGGCATGCCGGCGATCCCG
GAATTTGCTGACCTTTAA

Upstream 100 bases:

>100_bases
CGCGGTTATTAAGACGAGAGAACCCCGCCACGGCGGGGTTTTTGCTAATCAATAGCCCGGTTTCCTGCTATTCTTGCGGC
AAACAGAAGAGGAGAATGTG

Downstream 100 bases:

>100_bases
TTTGTATAACTGGAATAACTGAATGAACGAGTTTTCAATCCTCTGCCGCGTGCTGGGTTCGCTGTATTACCGTCAACCGC
AGGACCCGCTGCTGGTGCCG

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MYPVDLHMHTVASTHAYSTLHDYIAEAKRKGIKLFAITDHGPDMADAPHYWHFVNMRIWPRLVDGVGILRGIESNIKNIE
GEIDCSGPMLTSLDLIIAGFHEPVFPPQDRDTHTQAMIAAMASGKVHMISHPGNPKFPVDIPAIAEAAARYQVALEINNS
SFVSSRVGSEDNCRAIAAAVRDAGGWVALGSDSHTAFTLGEFTECRKILDAVDFPEDRILNVSPRRLLNFLESRGMPAIP
EFADL

Sequences:

>Translated_245_residues
MYPVDLHMHTVASTHAYSTLHDYIAEAKRKGIKLFAITDHGPDMADAPHYWHFVNMRIWPRLVDGVGILRGIESNIKNIE
GEIDCSGPMLTSLDLIIAGFHEPVFPPQDRDTHTQAMIAAMASGKVHMISHPGNPKFPVDIPAIAEAAARYQVALEINNS
SFVSSRVGSEDNCRAIAAAVRDAGGWVALGSDSHTAFTLGEFTECRKILDAVDFPEDRILNVSPRRLLNFLESRGMPAIP
EFADL
>Mature_245_residues
MYPVDLHMHTVASTHAYSTLHDYIAEAKRKGIKLFAITDHGPDMADAPHYWHFVNMRIWPRLVDGVGILRGIESNIKNIE
GEIDCSGPMLTSLDLIIAGFHEPVFPPQDRDTHTQAMIAAMASGKVHMISHPGNPKFPVDIPAIAEAAARYQVALEINNS
SFVSSRVGSEDNCRAIAAAVRDAGGWVALGSDSHTAFTLGEFTECRKILDAVDFPEDRILNVSPRRLLNFLESRGMPAIP
EFADL

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHP family [H]

Homologues:

Organism=Escherichia coli, GI1787271, Length=245, Percent_Identity=82.4489795918367, Blast_Score=414, Evalue=1e-117,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010140
- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: NA

Molecular weight: Translated: 26928; Mature: 26928

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYPVDLHMHTVASTHAYSTLHDYIAEAKRKGIKLFAITDHGPDMADAPHYWHFVNMRIWP
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCEEEEEEEEHHH
RLVDGVGILRGIESNIKNIEGEIDCSGPMLTSLDLIIAGFHEPVFPPQDRDTHTQAMIAA
HHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
MASGKVHMISHPGNPKFPVDIPAIAEAAARYQVALEINNSSFVSSRVGSEDNCRAIAAAV
HHCCCEEEEECCCCCCCCCCCHHHHHHHHEEEEEEEECCCHHHHHHCCCCCCHHHHHHHH
RDAGGWVALGSDSHTAFTLGEFTECRKILDAVDFPEDRILNVSPRRLLNFLESRGMPAIP
HCCCCEEEECCCCCCEEEHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHCCCCCCC
EFADL
HHHCC
>Mature Secondary Structure
MYPVDLHMHTVASTHAYSTLHDYIAEAKRKGIKLFAITDHGPDMADAPHYWHFVNMRIWP
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCEEEEEEEEHHH
RLVDGVGILRGIESNIKNIEGEIDCSGPMLTSLDLIIAGFHEPVFPPQDRDTHTQAMIAA
HHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
MASGKVHMISHPGNPKFPVDIPAIAEAAARYQVALEINNSSFVSSRVGSEDNCRAIAAAV
HHCCCEEEEECCCCCCCCCCCHHHHHHHHEEEEEEEECCCHHHHHHCCCCCCHHHHHHHH
RDAGGWVALGSDSHTAFTLGEFTECRKILDAVDFPEDRILNVSPRRLLNFLESRGMPAIP
HCCCCEEEECCCCCCEEEHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHCCCCCCC
EFADL
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA