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The map label for this gene is ycdJ [H]

Identifier: 238894074

GI number: 238894074

Start: 1970891

End: 1971691

Strand: Reverse

Name: ycdJ [H]

Synonym: KP1_2023

Alternate gene names: 238894074

Gene position: 1971691-1970891 (Counterclockwise)

Preceding gene: 238894075

Following gene: 238894073

Centisome position: 37.57

GC content: 68.54

Gene sequence:

>801_bases
ATGAGGCTCAATATTGCTCCGGCTCCGTGGCCCGGCGCGCCGGTGGTGGTCCTCAGCGCCGGTCTGGGCGGGGGCGGCGG
CTACTGGCTGGCGCAGCGCGCGGCGCTGGAGGAACAGTATCAGCTGGTGAGTTATGACCATAACGGGACCGGGGAGAACG
CCGGTCCGCTGCCCGCCGACTACAGCCTGGCGACGATGGCCGGGGAGCTGTTCAGCGCTCTGCAGGCGGCGGGGATCGCC
CGCTTCGCGCTGGTGGGCCACGCCCTGGGGGCGCTGATTGGCCTGCAGCTGGCGCTCGATCGCCCCGAGGCGGTGAGCGC
CCTGGCGCTGGTCAACGGCTGGCTGTCGCTGTCGCCGCATACCCGCCGCTGCTTCCAGGTGCGCGAGCGTCTGCTGCATG
CCGGCGGCGCGCAGGCGTGGGTCGAAGCGCAGCCGCTATTTCTCTACCCGGCGGAATGGATGGCCGCGCGCCTGCCGCGC
CTCGAAGCGGAAGATGCGCTTGCCATCAGCCATTTTCAGGGCAAAGAGAATCTGCTGAAGCGGCTGCAGGCCCTGAAGCA
GGCTGATTTTTCACGCCGTGCGTCGGCCATCGCCTGCCCGACGCTGATTATCAGCGCCGCTGACGACCTGCTGGTCCCCG
CCTCCTGCTCCCGCGTGCTGCAGACGGCGATCCCCGGCAGCCAGCTCGTGGAAATGCCGTGGGGCGGCCATGCCTGTAAC
GTCACCGACGCCGATACCTTTAATACCATTTTACGCGACGGGCTGTCCGCTATGCTGCCGGTCGCCAGGGAGACCCGATG
A

Upstream 100 bases:

>100_bases
CCGGCGATAAACCGGCGCGCTTCTGCATTCAGTGCGGACTGGTGAAGCCCGATGCGCTGGTGGAAATCGCCAGCGTCGCC
CATATCGGTACCCCGACATG

Downstream 100 bases:

>100_bases
ACGACGCGATAAACCACACGGCCTGCGAGACGCTGTTTACCCAGGCCCGGACCCACAACGGCTGGCTGGATAAGCCGGTG
AGCGATGCGCAGCTGCAGGC

Product: putative hydrolase

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MRLNIAPAPWPGAPVVVLSAGLGGGGGYWLAQRAALEEQYQLVSYDHNGTGENAGPLPADYSLATMAGELFSALQAAGIA
RFALVGHALGALIGLQLALDRPEAVSALALVNGWLSLSPHTRRCFQVRERLLHAGGAQAWVEAQPLFLYPAEWMAARLPR
LEAEDALAISHFQGKENLLKRLQALKQADFSRRASAIACPTLIISAADDLLVPASCSRVLQTAIPGSQLVEMPWGGHACN
VTDADTFNTILRDGLSAMLPVARETR

Sequences:

>Translated_266_residues
MRLNIAPAPWPGAPVVVLSAGLGGGGGYWLAQRAALEEQYQLVSYDHNGTGENAGPLPADYSLATMAGELFSALQAAGIA
RFALVGHALGALIGLQLALDRPEAVSALALVNGWLSLSPHTRRCFQVRERLLHAGGAQAWVEAQPLFLYPAEWMAARLPR
LEAEDALAISHFQGKENLLKRLQALKQADFSRRASAIACPTLIISAADDLLVPASCSRVLQTAIPGSQLVEMPWGGHACN
VTDADTFNTILRDGLSAMLPVARETR
>Mature_266_residues
MRLNIAPAPWPGAPVVVLSAGLGGGGGYWLAQRAALEEQYQLVSYDHNGTGENAGPLPADYSLATMAGELFSALQAAGIA
RFALVGHALGALIGLQLALDRPEAVSALALVNGWLSLSPHTRRCFQVRERLLHAGGAQAWVEAQPLFLYPAEWMAARLPR
LEAEDALAISHFQGKENLLKRLQALKQADFSRRASAIACPTLIISAADDLLVPASCSRVLQTAIPGSQLVEMPWGGHACN
VTDADTFNTILRDGLSAMLPVARETR

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

Organism=Escherichia coli, GI1787244, Length=248, Percent_Identity=66.5322580645161, Blast_Score=345, Evalue=2e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 28307; Mature: 28307

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLNIAPAPWPGAPVVVLSAGLGGGGGYWLAQRAALEEQYQLVSYDHNGTGENAGPLPAD
CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCC
YSLATMAGELFSALQAAGIARFALVGHALGALIGLQLALDRPEAVSALALVNGWLSLSPH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH
TRRCFQVRERLLHAGGAQAWVEAQPLFLYPAEWMAARLPRLEAEDALAISHFQGKENLLK
HHHHHHHHHHHHHCCCCCCEEECCCEEEECHHHHHHHCCCCCCCCHHHHHHCCCHHHHHH
RLQALKQADFSRRASAIACPTLIISAADDLLVPASCSRVLQTAIPGSQLVEMPWGGHACN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCC
VTDADTFNTILRDGLSAMLPVARETR
CCCCHHHHHHHHHHHHHHHCHHHCCC
>Mature Secondary Structure
MRLNIAPAPWPGAPVVVLSAGLGGGGGYWLAQRAALEEQYQLVSYDHNGTGENAGPLPAD
CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCC
YSLATMAGELFSALQAAGIARFALVGHALGALIGLQLALDRPEAVSALALVNGWLSLSPH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH
TRRCFQVRERLLHAGGAQAWVEAQPLFLYPAEWMAARLPRLEAEDALAISHFQGKENLLK
HHHHHHHHHHHHHCCCCCCEEECCCEEEECHHHHHHHCCCCCCCCHHHHHHCCCHHHHHH
RLQALKQADFSRRASAIACPTLIISAADDLLVPASCSRVLQTAIPGSQLVEMPWGGHACN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCC
VTDADTFNTILRDGLSAMLPVARETR
CCCCHHHHHHHHHHHHHHHCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA