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The map label for this gene is ybcM [H]

Identifier: 238894024

GI number: 238894024

Start: 1922550

End: 1923329

Strand: Direct

Name: ybcM [H]

Synonym: KP1_1970

Alternate gene names: 238894024

Gene position: 1922550-1923329 (Clockwise)

Preceding gene: 238894023

Following gene: 238894025

Centisome position: 36.63

GC content: 61.92

Gene sequence:

>780_bases
ATCCACTTTCAGCATAGCGCCTTAACCGCGGCGGAGATCACCACCCGACGGCTATGCAGACTGCATCGCGTGCGGCTGTT
CTCCCCGGCGCTCTGTCGGGTAAAACGCGGCAGTAAAGTGATTGTGCAAGGGGAGAGCCGGGTGCTGGCGACTCCGCAAC
AGCTGATTGTTTTGCCAGCTGACGTGGAACTGGAGGTGATTAACCAGCCGGAGAATGGCCTCTTTTGCTCCGATCTGCTA
TCGCTGACGCCCGAGCTGCTGACGAGGTTTAAGACTCGTTATCTCAGCGAACCACCGCCAGGGCGCCTGACCTCGCTCTG
CGCACCGGTGACGACAGAGCTGGCGTTTATGTGGCAAAGCGTTCTGCAGGCGGTGCGGGAGGGATTGTCCGTCGCGCTGC
AGCAGCACCAGACCATGGGGCTGCTGCTGGCCCTGTATGAGGCTGGCTATGCGGGCCCGCTGCTCGTCGAGCGGCAGCAG
GATCTGTCGGCGCAGGTGCGGCAACTGATTATGCTGTCGCCGGCGCAGGCATGGAGCGTGTCGCGGGTGGCGAAAATGCT
CTTTCTCGGCGAGTCCACGCTGCGCCGTCGGCTGCAGCAGGAATCGCAGAGTTTTCGCCAGATCGTCGAGGAGGTGCGGA
TGGCCCACGCCCTGGGGCAGCTGCAGACGACCTCGCGGCCAATAGGCGAAATTGCGCAGAACAGCGGATATCAGTCGGGA
TCGCGCTTTACCGCGCGCTTCCGTCAGCATTATGGTTTACTGCCGAAGCATGTACGCTGA

Upstream 100 bases:

>100_bases
GGGCGCTGGTCGGCTATCTGTTACATAGCCATGCTCTCGCCAGCGCACAGTTGACGGCGATGGCCGGGCGTTAAAATAAA
AGGTCGGTCTGATGGAGAGT

Downstream 100 bases:

>100_bases
GCGAATTTGCTATCCTCAGCGTATAGCGTGAGCGAAAAGGAGATGATTATGGCCAGTATCTGCACAATGGCATGGGTTTA
CGGTTCGGTTCAGGGCGTGG

Product: putative AraC-type regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MHFQHSALTAAEITTRRLCRLHRVRLFSPALCRVKRGSKVIVQGESRVLATPQQLIVLPADVELEVINQPENGLFCSDLL
SLTPELLTRFKTRYLSEPPPGRLTSLCAPVTTELAFMWQSVLQAVREGLSVALQQHQTMGLLLALYEAGYAGPLLVERQQ
DLSAQVRQLIMLSPAQAWSVSRVAKMLFLGESTLRRRLQQESQSFRQIVEEVRMAHALGQLQTTSRPIGEIAQNSGYQSG
SRFTARFRQHYGLLPKHVR

Sequences:

>Translated_259_residues
MHFQHSALTAAEITTRRLCRLHRVRLFSPALCRVKRGSKVIVQGESRVLATPQQLIVLPADVELEVINQPENGLFCSDLL
SLTPELLTRFKTRYLSEPPPGRLTSLCAPVTTELAFMWQSVLQAVREGLSVALQQHQTMGLLLALYEAGYAGPLLVERQQ
DLSAQVRQLIMLSPAQAWSVSRVAKMLFLGESTLRRRLQQESQSFRQIVEEVRMAHALGQLQTTSRPIGEIAQNSGYQSG
SRFTARFRQHYGLLPKHVR
>Mature_259_residues
MHFQHSALTAAEITTRRLCRLHRVRLFSPALCRVKRGSKVIVQGESRVLATPQQLIVLPADVELEVINQPENGLFCSDLL
SLTPELLTRFKTRYLSEPPPGRLTSLCAPVTTELAFMWQSVLQAVREGLSVALQQHQTMGLLLALYEAGYAGPLLVERQQ
DLSAQVRQLIMLSPAQAWSVSRVAKMLFLGESTLRRRLQQESQSFRQIVEEVRMAHALGQLQTTSRPIGEIAQNSGYQSG
SRFTARFRQHYGLLPKHVR

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786758, Length=254, Percent_Identity=34.251968503937, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI1786776, Length=225, Percent_Identity=23.5555555555556, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787776, Length=105, Percent_Identity=34.2857142857143, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790557, Length=96, Percent_Identity=34.375, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789932, Length=103, Percent_Identity=33.9805825242718, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29166; Mature: 29166

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHFQHSALTAAEITTRRLCRLHRVRLFSPALCRVKRGSKVIVQGESRVLATPQQLIVLPA
CCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCCCEEECCHHEEEECC
DVELEVINQPENGLFCSDLLSLTPELLTRFKTRYLSEPPPGRLTSLCAPVTTELAFMWQS
CCEEEEECCCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
VLQAVREGLSVALQQHQTMGLLLALYEAGYAGPLLVERQQDLSAQVRQLIMLSPAQAWSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
SRVAKMLFLGESTLRRRLQQESQSFRQIVEEVRMAHALGQLQTTSRPIGEIAQNSGYQSG
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCC
SRFTARFRQHYGLLPKHVR
HHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MHFQHSALTAAEITTRRLCRLHRVRLFSPALCRVKRGSKVIVQGESRVLATPQQLIVLPA
CCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCCCEEECCHHEEEECC
DVELEVINQPENGLFCSDLLSLTPELLTRFKTRYLSEPPPGRLTSLCAPVTTELAFMWQS
CCEEEEECCCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
VLQAVREGLSVALQQHQTMGLLLALYEAGYAGPLLVERQQDLSAQVRQLIMLSPAQAWSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
SRVAKMLFLGESTLRRRLQQESQSFRQIVEEVRMAHALGQLQTTSRPIGEIAQNSGYQSG
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCC
SRFTARFRQHYGLLPKHVR
HHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]