Click here to switch to the map view.

The map label for this gene is ybcL [H]

Identifier: 238894023

GI number: 238894023

Start: 1921969

End: 1922523

Strand: Direct

Name: ybcL [H]

Synonym: KP1_1969

Alternate gene names: 238894023

Gene position: 1921969-1922523 (Clockwise)

Preceding gene: 238894020

Following gene: 238894024

Centisome position: 36.62

GC content: 65.05

Gene sequence:

>555_bases
ATGAAAACAGGTATCCGCATGGCTGTGGCGATGGTAGCGGCTGTGAGCAGCGGCGCGATGGCCGCGCCGTTTAGCGTAAG
CAGCAATGATATGCGTGACGGGCAGCCGCTGGCCCAGCAGCACTGGTTTGCCGGTTTCGGCTGTACCGGAGGCAATGTCT
CTCCGCAGCTGGGATGGAAAAACGCCCCGGCGGGTACGCGCAGCTTCGCGGTCACCGTCCGGGATCCCGATGCGCCTACC
GGCAGCGGCTGGTGGCACTGGACGGTGGTCAATATCGCCAGCAGCGTCTTTTCGCTGCCCGCTGGCGCGGGAGATAAAAA
CAGCGCTACACTGCCGGGCGGAGCGATCCAGGGCCGCAACGATTTTGGCTATGCCGGCTTCGGCGGCGCCTGTCCGCCGG
CGGGAGATAAACCGCACCGCTATCGCTTTACGGTATGGGCGCTGGATGTCCCCACGCTGCCGGTGGATGCCGGGGCCAGC
GGGGCGCTGGTCGGCTATCTGTTACATAGCCATGCTCTCGCCAGCGCACAGTTGACGGCGATGGCCGGGCGTTAA

Upstream 100 bases:

>100_bases
GGCACAGGTGAGCGTTTCGGCACAAAATGCAGGCGCTTCGGCACATTCAGCTGGTGCGGACTCTCATACCCTGTTTTCTC
ACCCCAACGAGGAGCAGACG

Downstream 100 bases:

>100_bases
AATAAAAGGTCGGTCTGATGGAGAGTATCCACTTTCAGCATAGCGCCTTAACCGCGGCGGAGATCACCACCCGACGGCTA
TGCAGACTGCATCGCGTGCG

Product: putative outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MKTGIRMAVAMVAAVSSGAMAAPFSVSSNDMRDGQPLAQQHWFAGFGCTGGNVSPQLGWKNAPAGTRSFAVTVRDPDAPT
GSGWWHWTVVNIASSVFSLPAGAGDKNSATLPGGAIQGRNDFGYAGFGGACPPAGDKPHRYRFTVWALDVPTLPVDAGAS
GALVGYLLHSHALASAQLTAMAGR

Sequences:

>Translated_184_residues
MKTGIRMAVAMVAAVSSGAMAAPFSVSSNDMRDGQPLAQQHWFAGFGCTGGNVSPQLGWKNAPAGTRSFAVTVRDPDAPT
GSGWWHWTVVNIASSVFSLPAGAGDKNSATLPGGAIQGRNDFGYAGFGGACPPAGDKPHRYRFTVWALDVPTLPVDAGAS
GALVGYLLHSHALASAQLTAMAGR
>Mature_184_residues
MKTGIRMAVAMVAAVSSGAMAAPFSVSSNDMRDGQPLAQQHWFAGFGCTGGNVSPQLGWKNAPAGTRSFAVTVRDPDAPT
GSGWWHWTVVNIASSVFSLPAGAGDKNSATLPGGAIQGRNDFGYAGFGGACPPAGDKPHRYRFTVWALDVPTLPVDAGAS
GALVGYLLHSHALASAQLTAMAGR

Specific function: Unknown

COG id: COG1881

COG function: function code R; Phospholipid-binding protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0098 family [H]

Homologues:

Organism=Escherichia coli, GI1786757, Length=179, Percent_Identity=59.2178770949721, Blast_Score=226, Evalue=5e-61,
Organism=Escherichia coli, GI1786990, Length=154, Percent_Identity=55.1948051948052, Blast_Score=172, Evalue=9e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008914
- InterPro:   IPR005247 [H]

Pfam domain/function: PF01161 PBP [H]

EC number: NA

Molecular weight: Translated: 18843; Mature: 18843

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTGIRMAVAMVAAVSSGAMAAPFSVSSNDMRDGQPLAQQHWFAGFGCTGGNVSPQLGWK
CCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCHHHHCCCEEECCCCCCCCCCCCCC
NAPAGTRSFAVTVRDPDAPTGSGWWHWTVVNIASSVFSLPAGAGDKNSATLPGGAIQGRN
CCCCCCCEEEEEEECCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCC
DFGYAGFGGACPPAGDKPHRYRFTVWALDVPTLPVDAGASGALVGYLLHSHALASAQLTA
CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHEEEE
MAGR
ECCC
>Mature Secondary Structure
MKTGIRMAVAMVAAVSSGAMAAPFSVSSNDMRDGQPLAQQHWFAGFGCTGGNVSPQLGWK
CCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCHHHHCCCEEECCCCCCCCCCCCCC
NAPAGTRSFAVTVRDPDAPTGSGWWHWTVVNIASSVFSLPAGAGDKNSATLPGGAIQGRN
CCCCCCCEEEEEEECCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCC
DFGYAGFGGACPPAGDKPHRYRFTVWALDVPTLPVDAGASGALVGYLLHSHALASAQLTA
CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHEEEE
MAGR
ECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 11439028 [H]