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The map label for this gene is yccS [H]

Identifier: 238894016

GI number: 238894016

Start: 1914352

End: 1916487

Strand: Reverse

Name: yccS [H]

Synonym: KP1_1962

Alternate gene names: 238894016

Gene position: 1916487-1914352 (Counterclockwise)

Preceding gene: 238894017

Following gene: 238894014

Centisome position: 36.51

GC content: 58.94

Gene sequence:

>2136_bases
ATGATTAGCCCCCTGCTACGCCGCTACACCTGGAACAGCGCCTGGCTTTATAACGTACGAATTTTTATCGCGCTCTGCGG
CACAACGCTGTTTCCCTGGTGGATCGGCGAAGTCAAACTGACCATCCCCCTCACCCTCGGCGTCGTGGCTGCGGCTCTGA
CCGACCTTGACGACCGTCTGGCCGGCCGTCTGCGTAATCTTGCCATTACTCTGGTTTGCTTTTTTATCGCCTCCGCCTCC
GTGGAGCTGCTGTTTCCGTGGCCGCCGCTGTTTGCCCTTGGTTTAACCGTGTCTACCATCGGCTTTATTTTGCTTGGCGG
CCTCGGTCAGCGCTATGCGACCATTGCCTTCGGCGCCCTGCTTATCGCCATCTACACCATGCTCGGCGTCACGCTGTACG
ATCATTGGTATCTGCAGCCGTTGTTCCTGCTGGCGGGGGCAGTGTGGTACAACCTGCTGACGCTGTCCGGGCACCTGATC
TTTCCGATTCGTCCATTGCAGGACAACCTGGCGCGTAGCTATGAGCAGCTGGCCCGCTATCTTGAGCTCAAATCCCGGCT
GTTTGATCCTGACCTTGAGGATGAGAGCCAGGCGCCGCTGTACGATCTGGCGCTCGCTAATGGCCAGCTGGTAGCTACGC
TTAACCAAACCAAGGTCTCGCTGCTAACCCGACTGCGAGGCGATCGGGGCCAGCGCGGCACCCGCCGCACCCTGCAGTAC
TACTTTGTGGCCCAGGATATTCATGAACGCGCCAGCTCATCGCATATTCAGTATCAAACCCTACGCGATCAATTTCGCTA
TAGCGATGTGATGTTCCGTTTCCAGCGAATGCTTTCGATGCAGGCGCAGGCCTGCCAGAAACTGTCGCGGGCGATTCTGT
TACGCGAACCCTATCAGCATGATGCCCATTTTGAACGGGCGTTCATGCATCTCGATGCGGCACTTGAGCGCGTGCGCGCC
GGCGGCGCATCCGACGAGCAGCTCAACGCCCTCGGGTATTTACTGAATAACCTGCGCGCTATCGATGCTCAGCTGGCCAC
CATTGAATCGGTGCAAACCACCGCGCCTGCCGGGAGTAATACCGAGACGCTGCTGGCCGACGACAGACTTGGCGGTCTGA
GCGATATCTGGCTGCGCCTGCAGCGCAATATGTCGCCAGAGTCGGCCCTTTTCCGCCACGCAGTACGTATGTCGTTGGTG
CTCTGCGCCGGCTATGCCTTTATTCAGTTTACCGGGCTCCAGCATGGCTACTGGATCCTGCTAACCAGCCTGTTCGTCTG
TCAGCCGAACTATAACGCCACCCGCCATCGCCTGGCGCTAAGGATTATCGGCACGCTGGTTGGGGTGGCGATCGGCCTGC
CGGTCCTGCTGCTGGTTCCCTCTGTTGAAGGGCAACTGCTGTTGATCGTCCTGACCGGCGTGCTGTTTTTTGCCTTCCGT
AACGTGCAGTACGCCCATGCCACGATGTTTATTACGCTGCTGGTGCTGCTGTGCTTTAACCTGCTTGGCGAGGGCTTTGA
AGTCGCGCTGCCGCGTATCATTGATACGCTGATCGGCTGCGCCATCGCCTGGGCAGCGGTCAGCTTCATCTGGCCGGACT
GGAAATTCCGCAACCTGCCGCGGGTGCTGGACCGGGCAATGAACGCGAACTGCCGCTATCTGGACGCGATTCTGGAGCAG
TATCATCAGGGCCGCGACAACCGGCTGGCCTACCGTGTCGCGCGTCGTGACGCCTACAACCGTGATGCTGAGCTGGCCTC
CGTCGTCTCTAACTTATCGACTGAACCACGCGCGGATGCCACCCAGCGAGAAACCGCCTTTCGTCTGCTATGCCTTAACC
ACACGTTCACCAGCTACATCTCCGCTCTTGGCGCGCATCGGGAAAAACTGTCCACGCCGGAAATCCTCGCCCTGCTGGAT
GATGCAGTCTGTTATGTGGATGACGCCTTGCACCATACCCCCGCGGATGAACAGCGGGTGCAACAGGCTTTGAACAGCCT
GCAAAGCCGGATCCATCATCTGGAACCGCGCGCGGACAGTAAGGAACCCTTGGTCTTACAGCAGATTGGCCTGCTGCTGG
CGCTGCTGCCTGAAATCTGCCGCCTGCAGCAACGGGTCCACGCCCAAACCGAATAA

Upstream 100 bases:

>100_bases
TCTGGCCGGTGGGTCGCCGGGTCGTTTCTGTGGAAACCGCGCGTGCTGCGCGTGAAGCCAATGCGCGTCGTCGCTTTCAG
TAACCGAACGGAACACGGAC

Downstream 100 bases:

>100_bases
CAAGGCTTTTCCGCTACCGGGTAGCCGCCCATTCGAGAAGCTCCTGACGCCGTGGCGTCGGGAGCGCGGCGGCATGTACC
CCGGCAATCGCCCCCTCCAG

Product: putative PET-family efflux transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 711; Mature: 711

Protein sequence:

>711_residues
MISPLLRRYTWNSAWLYNVRIFIALCGTTLFPWWIGEVKLTIPLTLGVVAAALTDLDDRLAGRLRNLAITLVCFFIASAS
VELLFPWPPLFALGLTVSTIGFILLGGLGQRYATIAFGALLIAIYTMLGVTLYDHWYLQPLFLLAGAVWYNLLTLSGHLI
FPIRPLQDNLARSYEQLARYLELKSRLFDPDLEDESQAPLYDLALANGQLVATLNQTKVSLLTRLRGDRGQRGTRRTLQY
YFVAQDIHERASSSHIQYQTLRDQFRYSDVMFRFQRMLSMQAQACQKLSRAILLREPYQHDAHFERAFMHLDAALERVRA
GGASDEQLNALGYLLNNLRAIDAQLATIESVQTTAPAGSNTETLLADDRLGGLSDIWLRLQRNMSPESALFRHAVRMSLV
LCAGYAFIQFTGLQHGYWILLTSLFVCQPNYNATRHRLALRIIGTLVGVAIGLPVLLLVPSVEGQLLLIVLTGVLFFAFR
NVQYAHATMFITLLVLLCFNLLGEGFEVALPRIIDTLIGCAIAWAAVSFIWPDWKFRNLPRVLDRAMNANCRYLDAILEQ
YHQGRDNRLAYRVARRDAYNRDAELASVVSNLSTEPRADATQRETAFRLLCLNHTFTSYISALGAHREKLSTPEILALLD
DAVCYVDDALHHTPADEQRVQQALNSLQSRIHHLEPRADSKEPLVLQQIGLLLALLPEICRLQQRVHAQTE

Sequences:

>Translated_711_residues
MISPLLRRYTWNSAWLYNVRIFIALCGTTLFPWWIGEVKLTIPLTLGVVAAALTDLDDRLAGRLRNLAITLVCFFIASAS
VELLFPWPPLFALGLTVSTIGFILLGGLGQRYATIAFGALLIAIYTMLGVTLYDHWYLQPLFLLAGAVWYNLLTLSGHLI
FPIRPLQDNLARSYEQLARYLELKSRLFDPDLEDESQAPLYDLALANGQLVATLNQTKVSLLTRLRGDRGQRGTRRTLQY
YFVAQDIHERASSSHIQYQTLRDQFRYSDVMFRFQRMLSMQAQACQKLSRAILLREPYQHDAHFERAFMHLDAALERVRA
GGASDEQLNALGYLLNNLRAIDAQLATIESVQTTAPAGSNTETLLADDRLGGLSDIWLRLQRNMSPESALFRHAVRMSLV
LCAGYAFIQFTGLQHGYWILLTSLFVCQPNYNATRHRLALRIIGTLVGVAIGLPVLLLVPSVEGQLLLIVLTGVLFFAFR
NVQYAHATMFITLLVLLCFNLLGEGFEVALPRIIDTLIGCAIAWAAVSFIWPDWKFRNLPRVLDRAMNANCRYLDAILEQ
YHQGRDNRLAYRVARRDAYNRDAELASVVSNLSTEPRADATQRETAFRLLCLNHTFTSYISALGAHREKLSTPEILALLD
DAVCYVDDALHHTPADEQRVQQALNSLQSRIHHLEPRADSKEPLVLQQIGLLLALLPEICRLQQRVHAQTE
>Mature_711_residues
MISPLLRRYTWNSAWLYNVRIFIALCGTTLFPWWIGEVKLTIPLTLGVVAAALTDLDDRLAGRLRNLAITLVCFFIASAS
VELLFPWPPLFALGLTVSTIGFILLGGLGQRYATIAFGALLIAIYTMLGVTLYDHWYLQPLFLLAGAVWYNLLTLSGHLI
FPIRPLQDNLARSYEQLARYLELKSRLFDPDLEDESQAPLYDLALANGQLVATLNQTKVSLLTRLRGDRGQRGTRRTLQY
YFVAQDIHERASSSHIQYQTLRDQFRYSDVMFRFQRMLSMQAQACQKLSRAILLREPYQHDAHFERAFMHLDAALERVRA
GGASDEQLNALGYLLNNLRAIDAQLATIESVQTTAPAGSNTETLLADDRLGGLSDIWLRLQRNMSPESALFRHAVRMSLV
LCAGYAFIQFTGLQHGYWILLTSLFVCQPNYNATRHRLALRIIGTLVGVAIGLPVLLLVPSVEGQLLLIVLTGVLFFAFR
NVQYAHATMFITLLVLLCFNLLGEGFEVALPRIIDTLIGCAIAWAAVSFIWPDWKFRNLPRVLDRAMNANCRYLDAILEQ
YHQGRDNRLAYRVARRDAYNRDAELASVVSNLSTEPRADATQRETAFRLLCLNHTFTSYISALGAHREKLSTPEILALLD
DAVCYVDDALHHTPADEQRVQQALNSLQSRIHHLEPRADSKEPLVLQQIGLLLALLPEICRLQQRVHAQTE

Specific function: Unknown

COG id: COG1289

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yccS/yhfK family [H]

Homologues:

Organism=Escherichia coli, GI87081808, Length=706, Percent_Identity=82.2946175637394, Blast_Score=1185, Evalue=0.0,
Organism=Escherichia coli, GI87082248, Length=541, Percent_Identity=25.5083179297597, Blast_Score=100, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010019
- InterPro:   IPR010020 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 80290; Mature: 80290

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISPLLRRYTWNSAWLYNVRIFIALCGTTLFPWWIGEVKLTIPLTLGVVAAALTDLDDRL
CCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHH
AGRLRNLAITLVCFFIASASVELLFPWPPLFALGLTVSTIGFILLGGLGQRYATIAFGAL
HHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LIAIYTMLGVTLYDHWYLQPLFLLAGAVWYNLLTLSGHLIFPIRPLQDNLARSYEQLARY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHH
LELKSRLFDPDLEDESQAPLYDLALANGQLVATLNQTKVSLLTRLRGDRGQRGTRRTLQY
HHHHHHHCCCCCCCCCCCCHHHEEECCCCEEEEEHHHHHHHHHHHCCCCCCCCHHHHHHH
YFVAQDIHERASSSHIQYQTLRDQFRYSDVMFRFQRMLSMQAQACQKLSRAILLREPYQH
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DAHFERAFMHLDAALERVRAGGASDEQLNALGYLLNNLRAIDAQLATIESVQTTAPAGSN
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TETLLADDRLGGLSDIWLRLQRNMSPESALFRHAVRMSLVLCAGYAFIQFTGLQHGYWIL
CCEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHH
LTSLFVCQPNYNATRHRLALRIIGTLVGVAIGLPVLLLVPSVEGQLLLIVLTGVLFFAFR
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHH
NVQYAHATMFITLLVLLCFNLLGEGFEVALPRIIDTLIGCAIAWAAVSFIWPDWKFRNLP
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
RVLDRAMNANCRYLDAILEQYHQGRDNRLAYRVARRDAYNRDAELASVVSNLSTEPRADA
HHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCC
TQRETAFRLLCLNHTFTSYISALGAHREKLSTPEILALLDDAVCYVDDALHHTPADEQRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
QQALNSLQSRIHHLEPRADSKEPLVLQQIGLLLALLPEICRLQQRVHAQTE
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MISPLLRRYTWNSAWLYNVRIFIALCGTTLFPWWIGEVKLTIPLTLGVVAAALTDLDDRL
CCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHH
AGRLRNLAITLVCFFIASASVELLFPWPPLFALGLTVSTIGFILLGGLGQRYATIAFGAL
HHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LIAIYTMLGVTLYDHWYLQPLFLLAGAVWYNLLTLSGHLIFPIRPLQDNLARSYEQLARY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHH
LELKSRLFDPDLEDESQAPLYDLALANGQLVATLNQTKVSLLTRLRGDRGQRGTRRTLQY
HHHHHHHCCCCCCCCCCCCHHHEEECCCCEEEEEHHHHHHHHHHHCCCCCCCCHHHHHHH
YFVAQDIHERASSSHIQYQTLRDQFRYSDVMFRFQRMLSMQAQACQKLSRAILLREPYQH
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DAHFERAFMHLDAALERVRAGGASDEQLNALGYLLNNLRAIDAQLATIESVQTTAPAGSN
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TETLLADDRLGGLSDIWLRLQRNMSPESALFRHAVRMSLVLCAGYAFIQFTGLQHGYWIL
CCEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHH
LTSLFVCQPNYNATRHRLALRIIGTLVGVAIGLPVLLLVPSVEGQLLLIVLTGVLFFAFR
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHH
NVQYAHATMFITLLVLLCFNLLGEGFEVALPRIIDTLIGCAIAWAAVSFIWPDWKFRNLP
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
RVLDRAMNANCRYLDAILEQYHQGRDNRLAYRVARRDAYNRDAELASVVSNLSTEPRADA
HHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCC
TQRETAFRLLCLNHTFTSYISALGAHREKLSTPEILALLDDAVCYVDDALHHTPADEQRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
QQALNSLQSRIHHLEPRADSKEPLVLQQIGLLLALLPEICRLQQRVHAQTE
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]