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The map label for this gene is ybjR [H]

Identifier: 238893928

GI number: 238893928

Start: 1804475

End: 1805305

Strand: Direct

Name: ybjR [H]

Synonym: KP1_1865

Alternate gene names: 238893928

Gene position: 1804475-1805305 (Clockwise)

Preceding gene: 238893927

Following gene: 238893933

Centisome position: 34.38

GC content: 59.57

Gene sequence:

>831_bases
ATGAAACGGATGATGCGGATCGTGCTGCTGGCGCTGCTGCTGACCGGCTGCGCTGGGGAAAAGGGCATTATCGATCGCGA
CGGATACCAGCTGGACACCCGTCATCCGGCGCAGGCTGCCTATCCGCGAATAAAGGTGTTAGTGATCCACTATACGGCTG
ACAATTTTGATGTCTCGCTGGCCACGTTGACCGATAAAGAGGTCAGCTCCCACTATTTAATTCCTGAACAGCCCCCGCGT
TATCAGCATAAACCGCGGATCTGGCAGCTGGTGCCGGAAGAGGATTTAGCCTGGCACGCCGGGGTAAGCTACTGGCGCGG
CAGTACGCGCATTAACGATACCTCCATTGGCATTGAGCTGGAGAACCGCGGCTGGCAGAAGACGGTGGGCGTCAAAAGTT
TTACCCCCTTTCATCCGGAACAGATTGCGGCTCTGATCCCGCTGGCGCGCGATATCATCGCCCGCTACCACATCGCGCCG
CAGAATGTGGTCGCCCATGCGGATATCGCCCCGCAGCGCAAAGACGATCCGGGGCCGTTATTCCCCTGGCAACAGCTGGC
GCAGCAGGGGATCGGCGCCTGGCCTGACGAGCAGCGGGTGGCCTTTTATCTCAACGGGCGGCCGGCCAGCGAGCCAGTGG
ACCCCGAAATCGTACTGGATTTGCTCTCGCGCTATGGCTATCAGGTGACGCCGGAGATGACCCCCGCGCAGAAGAAGCGG
GTGATTATCGCCTTCCAGATGCACTTTCGTCCGCAGCGCTGGGATGGGGTAGCGGATGCGCAAACCGAAGCGATAGCCGA
GGCGCTGTTAGAAAAATATGGCCAGGGTTAG

Upstream 100 bases:

>100_bases
CTGATCGCCCGGGCGGACAGTGCGCTGTATCAGGCGAAAAATAATGGACGTAATCAATGGTCTTATTAACCCGGAGACGC
TGCCGGGCAAGGGAGAAGGG

Downstream 100 bases:

>100_bases
CGGTGTAGTTTACCGTGGTCGCGAAGCCAGGCGGCGGTGCGCACGATGCCGTCGTCAAGCGTCACCACCGGCTGATAGCC
CAGCTCGTCCTGCGCGCGGG

Product: putative N-acetylmuramoyl-L-alanine amidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MKRMMRIVLLALLLTGCAGEKGIIDRDGYQLDTRHPAQAAYPRIKVLVIHYTADNFDVSLATLTDKEVSSHYLIPEQPPR
YQHKPRIWQLVPEEDLAWHAGVSYWRGSTRINDTSIGIELENRGWQKTVGVKSFTPFHPEQIAALIPLARDIIARYHIAP
QNVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDEQRVAFYLNGRPASEPVDPEIVLDLLSRYGYQVTPEMTPAQKKR
VIIAFQMHFRPQRWDGVADAQTEAIAEALLEKYGQG

Sequences:

>Translated_276_residues
MKRMMRIVLLALLLTGCAGEKGIIDRDGYQLDTRHPAQAAYPRIKVLVIHYTADNFDVSLATLTDKEVSSHYLIPEQPPR
YQHKPRIWQLVPEEDLAWHAGVSYWRGSTRINDTSIGIELENRGWQKTVGVKSFTPFHPEQIAALIPLARDIIARYHIAP
QNVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDEQRVAFYLNGRPASEPVDPEIVLDLLSRYGYQVTPEMTPAQKKR
VIIAFQMHFRPQRWDGVADAQTEAIAEALLEKYGQG
>Mature_276_residues
MKRMMRIVLLALLLTGCAGEKGIIDRDGYQLDTRHPAQAAYPRIKVLVIHYTADNFDVSLATLTDKEVSSHYLIPEQPPR
YQHKPRIWQLVPEEDLAWHAGVSYWRGSTRINDTSIGIELENRGWQKTVGVKSFTPFHPEQIAALIPLARDIIARYHIAP
QNVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDEQRVAFYLNGRPASEPVDPEIVLDLLSRYGYQVTPEMTPAQKKR
VIIAFQMHFRPQRWDGVADAQTEAIAEALLEKYGQG

Specific function: Unknown

COG id: COG3023

COG function: function code V; Negative regulator of beta-lactamase expression

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787092, Length=275, Percent_Identity=76, Blast_Score=429, Evalue=1e-122,
Organism=Escherichia coli, GI1786300, Length=127, Percent_Identity=38.5826771653543, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002502
- InterPro:   IPR002477 [H]

Pfam domain/function: PF01510 Amidase_2 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 31302; Mature: 31302

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRMMRIVLLALLLTGCAGEKGIIDRDGYQLDTRHPAQAAYPRIKVLVIHYTADNFDVSL
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCHHHCCCEEEEEEEEEECCCCEEEE
ATLTDKEVSSHYLIPEQPPRYQHKPRIWQLVPEEDLAWHAGVSYWRGSTRINDTSIGIEL
EEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHCHHHHCCCCEECCCEEEEEE
ENRGWQKTVGVKSFTPFHPEQIAALIPLARDIIARYHIAPQNVVAHADIAPQRKDDPGPL
CCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCC
FPWQQLAQQGIGAWPDEQRVAFYLNGRPASEPVDPEIVLDLLSRYGYQVTPEMTPAQKKR
CHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCE
VIIAFQMHFRPQRWDGVADAQTEAIAEALLEKYGQG
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKRMMRIVLLALLLTGCAGEKGIIDRDGYQLDTRHPAQAAYPRIKVLVIHYTADNFDVSL
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCHHHCCCEEEEEEEEEECCCCEEEE
ATLTDKEVSSHYLIPEQPPRYQHKPRIWQLVPEEDLAWHAGVSYWRGSTRINDTSIGIEL
EEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHCHHHHCCCCEECCCEEEEEE
ENRGWQKTVGVKSFTPFHPEQIAALIPLARDIIARYHIAPQNVVAHADIAPQRKDDPGPL
CCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCC
FPWQQLAQQGIGAWPDEQRVAFYLNGRPASEPVDPEIVLDLLSRYGYQVTPEMTPAQKKR
CHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCE
VIIAFQMHFRPQRWDGVADAQTEAIAEALLEKYGQG
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]