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The map label for this gene is cph2 [H]

Identifier: 238893927

GI number: 238893927

Start: 1803304

End: 1804443

Strand: Direct

Name: cph2 [H]

Synonym: KP1_1864

Alternate gene names: 238893927

Gene position: 1803304-1804443 (Clockwise)

Preceding gene: 238893920

Following gene: 238893928

Centisome position: 34.36

GC content: 54.39

Gene sequence:

>1140_bases
ATGTTAACAAATAAGCGAGAGCGCGCCCGGCAGCAGCGAGCCGCGTTGTGGGCCACCAGAGATAATGTCCAGCGCCATGC
GCTGTCCATGAGTATGCCCTGGCTGGCCTTTGTCAATATCGCTTTTGCGTTAATGATTTTCTTCCGCAATTTTATCTTTA
CCTATTTTGATAAGAGGCTACTGACGCACCGGGCGGTTATTCCTTATATCGAAGCGGCGTTGATTGCGGTTATTATCATT
TCGGCCATTTTAGTGATTATTGCCCTCACGCCGCGACTGGCGCAGGGACGATATACGTTGAATATCATCACCGGGCTGCT
GCTGGCGCTCAGTCTGTGCTGGTCCCTGAGTAATTATTGTTTTATTTTTTTCTGGACCTTGCCCTTTGCCTGGCCGCTGC
TGGTGATATTAATGACTACCGGCCTCACCGCGCTGTATCACCATTGGCCCGGCATTACCGCTTTTATGCTGCCGCTATGG
GTGACCGCCTTGCTGGCGGGAATACAGCTCCACTATCACACCGAGATCCGCTTTTTGATCCTCTGGGCCATTTTTACCGC
GATTTTGCTGTATGGCCGACGTATTTTGCAGCGCTGGTATGACGAAGCCTGGGATACCCACCAGGAGAATATGCAGCTTA
TTCAGCGGCTGGAAAGTATCGCCAACCAGGATGCCTTAACCGGAACCGCTAACCGTCGGGCGCTCAATGCTTACCTGGCG
GCGATCTGGCAGCAAAAAACGCCGCTGGCGCTGATGATGATCGATGTCGATTATTTTAAGCGCTATAACGATCGCTATGG
CCATCAGGCTGGTGATGAGTGCTTATCTTCTGTCGCGCAGGTGCTTAAAATGGCGGTCCGGGCGGAGGGCGATCTGGTGG
CTCGCTACGGCGGCGAAGAGTTTGTCGTCGTGTTGCCCGGGGTGTCCTTAGCGCATGCCACCGCTATTGCCGAGCGCATT
CAGCAGAAGATCCGCGAGGCAGGCCTACCGCACGCCGCTTCGGCGGTGGCGTCGGAGGTCACCGTGAGTATCGGGATCGT
CGCCTCCGATGGCACGGTCCCGATAGAGACGCTGATCGCCCGGGCGGACAGTGCGCTGTATCAGGCGAAAAATAATGGAC
GTAATCAATGGTCTTATTAA

Upstream 100 bases:

>100_bases
TGAGGGGATAGGGCGCTGACAGACATTCCCGGTAACATGGTTTATCATATAGAAAAGCAGGGGCTGCGCCCATGGTCATG
CAGGTCACCAGGGAGATAAG

Downstream 100 bases:

>100_bases
CCCGGAGACGCTGCCGGGCAAGGGAGAAGGGATGAAACGGATGATGCGGATCGTGCTGCTGGCGCTGCTGCTGACCGGCT
GCGCTGGGGAAAAGGGCATT

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MLTNKRERARQQRAALWATRDNVQRHALSMSMPWLAFVNIAFALMIFFRNFIFTYFDKRLLTHRAVIPYIEAALIAVIII
SAILVIIALTPRLAQGRYTLNIITGLLLALSLCWSLSNYCFIFFWTLPFAWPLLVILMTTGLTALYHHWPGITAFMLPLW
VTALLAGIQLHYHTEIRFLILWAIFTAILLYGRRILQRWYDEAWDTHQENMQLIQRLESIANQDALTGTANRRALNAYLA
AIWQQKTPLALMMIDVDYFKRYNDRYGHQAGDECLSSVAQVLKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERI
QQKIREAGLPHAASAVASEVTVSIGIVASDGTVPIETLIARADSALYQAKNNGRNQWSY

Sequences:

>Translated_379_residues
MLTNKRERARQQRAALWATRDNVQRHALSMSMPWLAFVNIAFALMIFFRNFIFTYFDKRLLTHRAVIPYIEAALIAVIII
SAILVIIALTPRLAQGRYTLNIITGLLLALSLCWSLSNYCFIFFWTLPFAWPLLVILMTTGLTALYHHWPGITAFMLPLW
VTALLAGIQLHYHTEIRFLILWAIFTAILLYGRRILQRWYDEAWDTHQENMQLIQRLESIANQDALTGTANRRALNAYLA
AIWQQKTPLALMMIDVDYFKRYNDRYGHQAGDECLSSVAQVLKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERI
QQKIREAGLPHAASAVASEVTVSIGIVASDGTVPIETLIARADSALYQAKNNGRNQWSY
>Mature_379_residues
MLTNKRERARQQRAALWATRDNVQRHALSMSMPWLAFVNIAFALMIFFRNFIFTYFDKRLLTHRAVIPYIEAALIAVIII
SAILVIIALTPRLAQGRYTLNIITGLLLALSLCWSLSNYCFIFFWTLPFAWPLLVILMTTGLTALYHHWPGITAFMLPLW
VTALLAGIQLHYHTEIRFLILWAIFTAILLYGRRILQRWYDEAWDTHQENMQLIQRLESIANQDALTGTANRRALNAYLA
AIWQQKTPLALMMIDVDYFKRYNDRYGHQAGDECLSSVAQVLKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERI
QQKIREAGLPHAASAVASEVTVSIGIVASDGTVPIETLIARADSALYQAKNNGRNQWSY

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=175, Percent_Identity=41.7142857142857, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI87082007, Length=208, Percent_Identity=38.4615384615385, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=36.4197530864198, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=39.7515527950311, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787816, Length=196, Percent_Identity=31.1224489795918, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787802, Length=173, Percent_Identity=34.6820809248555, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=30.952380952381, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1786584, Length=188, Percent_Identity=28.7234042553192, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1787056, Length=168, Percent_Identity=32.7380952380952, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI1787541, Length=172, Percent_Identity=32.5581395348837, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=34.6153846153846, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788381, Length=177, Percent_Identity=31.638418079096, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87081974, Length=304, Percent_Identity=25.6578947368421, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 42955; Mature: 42955

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTNKRERARQQRAALWATRDNVQRHALSMSMPWLAFVNIAFALMIFFRNFIFTYFDKRL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTHRAVIPYIEAALIAVIIISAILVIIALTPRLAQGRYTLNIITGLLLALSLCWSLSNYC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
FIFFWTLPFAWPLLVILMTTGLTALYHHWPGITAFMLPLWVTALLAGIQLHYHTEIRFLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LWAIFTAILLYGRRILQRWYDEAWDTHQENMQLIQRLESIANQDALTGTANRRALNAYLA
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
AIWQQKTPLALMMIDVDYFKRYNDRYGHQAGDECLSSVAQVLKMAVRAEGDLVARYGGEE
HHHCCCCCEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCE
FVVVLPGVSLAHATAIAERIQQKIREAGLPHAASAVASEVTVSIGIVASDGTVPIETLIA
EEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEEEECCCCCHHHHHHH
RADSALYQAKNNGRNQWSY
HHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLTNKRERARQQRAALWATRDNVQRHALSMSMPWLAFVNIAFALMIFFRNFIFTYFDKRL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTHRAVIPYIEAALIAVIIISAILVIIALTPRLAQGRYTLNIITGLLLALSLCWSLSNYC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
FIFFWTLPFAWPLLVILMTTGLTALYHHWPGITAFMLPLWVTALLAGIQLHYHTEIRFLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LWAIFTAILLYGRRILQRWYDEAWDTHQENMQLIQRLESIANQDALTGTANRRALNAYLA
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
AIWQQKTPLALMMIDVDYFKRYNDRYGHQAGDECLSSVAQVLKMAVRAEGDLVARYGGEE
HHHCCCCCEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCE
FVVVLPGVSLAHATAIAERIQQKIREAGLPHAASAVASEVTVSIGIVASDGTVPIETLIA
EEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEEEECCCCCHHHHHHH
RADSALYQAKNNGRNQWSY
HHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]