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The map label for this gene is rlpA [H]

Identifier: 238893700

GI number: 238893700

Start: 1561338

End: 1562486

Strand: Reverse

Name: rlpA [H]

Synonym: KP1_1620

Alternate gene names: 238893700

Gene position: 1562486-1561338 (Counterclockwise)

Preceding gene: 238893701

Following gene: 238893699

Centisome position: 29.77

GC content: 64.06

Gene sequence:

>1149_bases
ATGCGTAAGCAATGGCTGGGGATCTGCATAGCAGCGGGGCTGCTGGCGGCATGTTCGAGTGATGACGTGCAACAAAAAAC
GGTCAGTACTCCACAGCCGGCCGTCTGTAATGGCCCGACGGTTGAGATCAGCGGCGCCGATCCGCAGTATGAAACGCCGA
ACGCCACGGCGAATCAGGATTATGAGCGCGACGGTAAAAGCTACAAAATCGTTCAGGATCCGGCCAACTTTACTCAGGCC
GGTTTCGCGGCGATCTATGACGCAGAACCCAACAGCAACCTGACCGCCAGCGGCGAAGCCTTCGATCCGACTCAGTTGAC
CGCAGCGCACCCGACGCTGCCGATCCCGAGCTACGCGCGGATCACTAACCTTGCCAACGGACGGATGATCGTCGTGCGGA
TTAACGATCGCGGTCCCTATGGCAACGATCGGGTCATCTCGCTTTCCCGCGCATCCGCTGACCGCCTGAACACCTCCAAC
AACACCAAAGTGCGCATCGACCCCATCATCGTCGCGCCTGACGGTTCGCTTTCCGGCCCGGGGATGGCCTGTACCACCGT
CGCCAAACAGACTTACGCCCTGCCCGCCCGTCCGAATCTGGACGGTGGGGACGCCGCTGGCATGAGCCAGCCCGCGCCCA
CTGACGTTCGCCCGATCAGCAACAGCACGCTGACGCCGGCAGACAGCGTGGGCGCGCCGGTGAACAGCGGCGGTTTCCTC
GGCGCGCCGACGCCCCTGAACAACGGCGTGCTGGAGAGTAGCGAACCAGCGGCAGCCGCCGCGACGGCTCCTGCCGCCGG
CGCCACGCCAACAGCGCCAGTGACCGCGCCTGGCTCCATTCAGGGTAATGTGGTGCCCGCTGCGGCCACCGCCGCAGCCG
CTGGCGCCGTGGCGGCCTCGTCCTCCGCGACCTCCAGCGCCAGCGGTAATTTTGTTGTCCAGGTGGGCGCAGTAAGCGAC
CAGACGCGGGCGCAGCAGTATCAGCAGCGCCTGAGCCAGCAGTTTTCTGTGCCAGGCCGGGTCATGCAAAACGGCGCGGT
CTGGCGTATTCAGCTGGGTCCCTTTGCTGATAAAGCACAGGCCAGCGCCGTGCAGCAGCGCCTGCAAAGCGAAGCGCAGC
TGCAGTCCTTTATTACTCGCGCCAACTAA

Upstream 100 bases:

>100_bases
GGGGCTCCGCCCTGATCGTACTGATGGCCGGGTTTGGTATCGTAATGTCGATCCATACCCACAGAAAAATGTTGTCGAAA
AGCGTTTAAAGGGGTTAGCA

Downstream 100 bases:

>100_bases
ACGCCGCGGGCCGCCCGTTCACCTCGCGCATGTAAAAGTCATTAACAAACTCATGCGCAATGTCGGATGCTGGCCCGCAG
AGCATTTGCTATAGTAAGGC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MRKQWLGICIAAGLLAACSSDDVQQKTVSTPQPAVCNGPTVEISGADPQYETPNATANQDYERDGKSYKIVQDPANFTQA
GFAAIYDAEPNSNLTASGEAFDPTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRASADRLNTSN
NTKVRIDPIIVAPDGSLSGPGMACTTVAKQTYALPARPNLDGGDAAGMSQPAPTDVRPISNSTLTPADSVGAPVNSGGFL
GAPTPLNNGVLESSEPAAAAATAPAAGATPTAPVTAPGSIQGNVVPAAATAAAAGAVAASSSATSSASGNFVVQVGAVSD
QTRAQQYQQRLSQQFSVPGRVMQNGAVWRIQLGPFADKAQASAVQQRLQSEAQLQSFITRAN

Sequences:

>Translated_382_residues
MRKQWLGICIAAGLLAACSSDDVQQKTVSTPQPAVCNGPTVEISGADPQYETPNATANQDYERDGKSYKIVQDPANFTQA
GFAAIYDAEPNSNLTASGEAFDPTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRASADRLNTSN
NTKVRIDPIIVAPDGSLSGPGMACTTVAKQTYALPARPNLDGGDAAGMSQPAPTDVRPISNSTLTPADSVGAPVNSGGFL
GAPTPLNNGVLESSEPAAAAATAPAAGATPTAPVTAPGSIQGNVVPAAATAAAAGAVAASSSATSSASGNFVVQVGAVSD
QTRAQQYQQRLSQQFSVPGRVMQNGAVWRIQLGPFADKAQASAVQQRLQSEAQLQSFITRAN
>Mature_382_residues
MRKQWLGICIAAGLLAACSSDDVQQKTVSTPQPAVCNGPTVEISGADPQYETPNATANQDYERDGKSYKIVQDPANFTQA
GFAAIYDAEPNSNLTASGEAFDPTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRASADRLNTSN
NTKVRIDPIIVAPDGSLSGPGMACTTVAKQTYALPARPNLDGGDAAGMSQPAPTDVRPISNSTLTPADSVGAPVNSGGFL
GAPTPLNNGVLESSEPAAAAATAPAAGATPTAPVTAPGSIQGNVVPAAATAAAAGAVAASSSATSSASGNFVVQVGAVSD
QTRAQQYQQRLSQQFSVPGRVMQNGAVWRIQLGPFADKAQASAVQQRLQSEAQLQSFITRAN

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=381, Percent_Identity=74.2782152230971, Blast_Score=523, Evalue=1e-149,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 39129; Mature: 39129

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKQWLGICIAAGLLAACSSDDVQQKTVSTPQPAVCNGPTVEISGADPQYETPNATANQD
CCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
YERDGKSYKIVQDPANFTQAGFAAIYDAEPNSNLTASGEAFDPTQLTAAHPTLPIPSYAR
HHHCCCEEEEEECCCCHHCCCEEEEEECCCCCCEEECCCCCCCCCEEECCCCCCCCCHHH
ITNLANGRMIVVRINDRGPYGNDRVISLSRASADRLNTSNNTKVRIDPIIVAPDGSLSGP
HHHCCCCCEEEEEECCCCCCCCCEEEEEECCCHHHCCCCCCCEEEEEEEEECCCCCCCCC
GMACTTVAKQTYALPARPNLDGGDAAGMSQPAPTDVRPISNSTLTPADSVGAPVNSGGFL
CCCHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
GAPTPLNNGVLESSEPAAAAATAPAAGATPTAPVTAPGSIQGNVVPAAATAAAAGAVAAS
CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHCC
SSATSSASGNFVVQVGAVSDQTRAQQYQQRLSQQFSVPGRVMQNGAVWRIQLGPFADKAQ
CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEECCCCCHHH
ASAVQQRLQSEAQLQSFITRAN
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRKQWLGICIAAGLLAACSSDDVQQKTVSTPQPAVCNGPTVEISGADPQYETPNATANQD
CCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
YERDGKSYKIVQDPANFTQAGFAAIYDAEPNSNLTASGEAFDPTQLTAAHPTLPIPSYAR
HHHCCCEEEEEECCCCHHCCCEEEEEECCCCCCEEECCCCCCCCCEEECCCCCCCCCHHH
ITNLANGRMIVVRINDRGPYGNDRVISLSRASADRLNTSNNTKVRIDPIIVAPDGSLSGP
HHHCCCCCEEEEEECCCCCCCCCEEEEEECCCHHHCCCCCCCEEEEEEEEECCCCCCCCC
GMACTTVAKQTYALPARPNLDGGDAAGMSQPAPTDVRPISNSTLTPADSVGAPVNSGGFL
CCCHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
GAPTPLNNGVLESSEPAAAAATAPAAGATPTAPVTAPGSIQGNVVPAAATAAAAGAVAAS
CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHCC
SSATSSASGNFVVQVGAVSDQTRAQQYQQRLSQQFSVPGRVMQNGAVWRIQLGPFADKAQ
CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEECCCCCHHH
ASAVQQRLQSEAQLQSFITRAN
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]