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The map label for this gene is ybdO [H]

Identifier: 238893681

GI number: 238893681

Start: 1545278

End: 1546210

Strand: Reverse

Name: ybdO [H]

Synonym: KP1_1599

Alternate gene names: 238893681

Gene position: 1546210-1545278 (Counterclockwise)

Preceding gene: 238893682

Following gene: 238893680

Centisome position: 29.46

GC content: 46.3

Gene sequence:

>933_bases
ATGGCAAATCTTTACGATCTGAAAAAGTTCGATTTGAATTTATTGGTTATTTTCGAATGTATCTATCAACATTTGAGCAT
CAGCAAAGCGGCGGCGATGTTATTTATCACCCCCTCAGCGGTGAGTCAGTCGTTGCAGCGTCTGCGCCAGCAGTTAAACG
ATCCGCTATTTGTTCGTGTTGGCAAAGGAATGACGCCCACCACCGCCTGCGTCAATCTTCATTATCATCTACAGCAAAAT
CTGGAGCAGCTGGAAAAAACCATCAATCTTAATAATCGCTCAGAACTGCGTAAACGTATTGTGATATATGGCCCCCCGCT
GTTCTGTTCAGTCAATAGCCACGTTATGATTAACCAGCTCTGTCATCAGGCGAACTTGCAAATTGAGCACCATAACCTGA
CCACCACCGAATCGGCTGAGGAGCTGCTGGCGTATCGCCAGGCGGACCTGGTGTTCACCCGCATGCCCATTACCAACCGC
GCCACGATCTGTCAGCCCTATCAGACGGTGCAGACGCTGGCAGTTTGCCGGGCGGGCCATCCGCGACGCGAAACGCTTAC
CTCGGTAGAGTCACTGGCGCAGGAGTTTTTCACTCACTATATTACCAACGATCCCGTTATTCAGCGCGTGCAGCAAAGCA
GCATCGCCTGGCTGAATCCGCGCAATATTGCCTTTCGCAGCGACTCTTTTATGACCATTCTTAACATGATTAATAAAACC
GACTTAATTGGCTTTTTGCCTTCCTATTTATATGACTTTATCTCACCCACTATGCAGCTTCACGCCATCAACATAGATAA
TCTTTTTCCGGATATCACGATCTACATTAATTACCACCATGCATCTTCGCAAAATCATTTTTTAACTGAATTAATCACCA
TATTAATGAATGATCGAGAGGCATCACGGCCCAAATTTAATCACAGCGAATAA

Upstream 100 bases:

>100_bases
GTATTTGCCAATAGTTAAATTCACACCGCAAATATTAAGCCACAAAACATTATCATTAAGAATATTATAATCCGCACCGG
TAATAAACAGGACTGCATTA

Downstream 100 bases:

>100_bases
CGCCCTTCTGTTCCCCCGCTGCCAGAAACAATAATCGACCATTAATTTCCTACCCCTCATCGTTTATACTGAGCTAACGG
GAATTTTCTACTATTAAAGG

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MANLYDLKKFDLNLLVIFECIYQHLSISKAAAMLFITPSAVSQSLQRLRQQLNDPLFVRVGKGMTPTTACVNLHYHLQQN
LEQLEKTINLNNRSELRKRIVIYGPPLFCSVNSHVMINQLCHQANLQIEHHNLTTTESAEELLAYRQADLVFTRMPITNR
ATICQPYQTVQTLAVCRAGHPRRETLTSVESLAQEFFTHYITNDPVIQRVQQSSIAWLNPRNIAFRSDSFMTILNMINKT
DLIGFLPSYLYDFISPTMQLHAINIDNLFPDITIYINYHHASSQNHFLTELITILMNDREASRPKFNHSE

Sequences:

>Translated_310_residues
MANLYDLKKFDLNLLVIFECIYQHLSISKAAAMLFITPSAVSQSLQRLRQQLNDPLFVRVGKGMTPTTACVNLHYHLQQN
LEQLEKTINLNNRSELRKRIVIYGPPLFCSVNSHVMINQLCHQANLQIEHHNLTTTESAEELLAYRQADLVFTRMPITNR
ATICQPYQTVQTLAVCRAGHPRRETLTSVESLAQEFFTHYITNDPVIQRVQQSSIAWLNPRNIAFRSDSFMTILNMINKT
DLIGFLPSYLYDFISPTMQLHAINIDNLFPDITIYINYHHASSQNHFLTELITILMNDREASRPKFNHSE
>Mature_309_residues
ANLYDLKKFDLNLLVIFECIYQHLSISKAAAMLFITPSAVSQSLQRLRQQLNDPLFVRVGKGMTPTTACVNLHYHLQQNL
EQLEKTINLNNRSELRKRIVIYGPPLFCSVNSHVMINQLCHQANLQIEHHNLTTTESAEELLAYRQADLVFTRMPITNRA
TICQPYQTVQTLAVCRAGHPRRETLTSVESLAQEFFTHYITNDPVIQRVQQSSIAWLNPRNIAFRSDSFMTILNMINKTD
LIGFLPSYLYDFISPTMQLHAINIDNLFPDITIYINYHHASSQNHFLTELITILMNDREASRPKFNHSE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786820, Length=293, Percent_Identity=48.8054607508532, Blast_Score=283, Evalue=1e-77,
Organism=Escherichia coli, GI87081766, Length=293, Percent_Identity=28.3276450511945, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI87081684, Length=292, Percent_Identity=21.5753424657534, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35777; Mature: 35645

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLYDLKKFDLNLLVIFECIYQHLSISKAAAMLFITPSAVSQSLQRLRQQLNDPLFVRV
CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHCCCCEEEEE
GKGMTPTTACVNLHYHLQQNLEQLEKTINLNNRSELRKRIVIYGPPLFCSVNSHVMINQL
CCCCCCCHHHEEHHHHHHHHHHHHHHHHCCCCHHHHHCEEEEECCCEEEECCCCHHHHHH
CHQANLQIEHHNLTTTESAEELLAYRQADLVFTRMPITNRATICQPYQTVQTLAVCRAGH
HHHCCCEEEECCCCCHHHHHHHHHHHHHCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCC
PRRETLTSVESLAQEFFTHYITNDPVIQRVQQSSIAWLNPRNIAFRSDSFMTILNMINKT
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEECCCCEEECCCHHHHHHHHHHHH
DLIGFLPSYLYDFISPTMQLHAINIDNLFPDITIYINYHHASSQNHFLTELITILMNDRE
HHHHHHHHHHHHHHCCCEEEEEEEHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCC
ASRPKFNHSE
CCCCCCCCCC
>Mature Secondary Structure 
ANLYDLKKFDLNLLVIFECIYQHLSISKAAAMLFITPSAVSQSLQRLRQQLNDPLFVRV
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHCCCCEEEEE
GKGMTPTTACVNLHYHLQQNLEQLEKTINLNNRSELRKRIVIYGPPLFCSVNSHVMINQL
CCCCCCCHHHEEHHHHHHHHHHHHHHHHCCCCHHHHHCEEEEECCCEEEECCCCHHHHHH
CHQANLQIEHHNLTTTESAEELLAYRQADLVFTRMPITNRATICQPYQTVQTLAVCRAGH
HHHCCCEEEECCCCCHHHHHHHHHHHHHCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCC
PRRETLTSVESLAQEFFTHYITNDPVIQRVQQSSIAWLNPRNIAFRSDSFMTILNMINKT
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEECCCCEEECCCHHHHHHHHHHHH
DLIGFLPSYLYDFISPTMQLHAINIDNLFPDITIYINYHHASSQNHFLTELITILMNDRE
HHHHHHHHHHHHHHCCCEEEEEEEHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCC
ASRPKFNHSE
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]