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The map label for this gene is ybdM [H]

Identifier: 238893679

GI number: 238893679

Start: 1543333

End: 1543959

Strand: Reverse

Name: ybdM [H]

Synonym: KP1_1597

Alternate gene names: 238893679

Gene position: 1543959-1543333 (Counterclockwise)

Preceding gene: 238893680

Following gene: 238893677

Centisome position: 29.42

GC content: 60.13

Gene sequence:

>627_bases
ATGCAACAACAACTGACGCAGGCGCTGGAAGCTTACCTGCAAAAGCTGGATGACGAGGCGCGCATTGAGGCTATCAACGC
GTTTCGCCAGGTGCTCCACCACTACAGCCCCTTCCGCTCGCAGCCCGTCGACTGCGTGCTGTGGGTCAAACAGGAGCTGG
TCGCCCCCAACGATTACAACCCGAATAACGTGGCGCCGCCGGAGAAGCGTCTGCTGCAAACGTCGCTGGAGGCCGACGGC
TTTACCCAGCCGGTCGTCGTCATCCAGCAACGCCCACAGGCGTATACGATTGTCGATGGTTTTCACCGCCATGAGCTGGC
CTGCAGCAAAGCCGCGCTGAAAAAAACGCTAAAAGGCTATTTGCCGGTGACCTGCCTGACGAGTGAAGCTGCCTCGCGTG
ACGGGCTGATGGCAGCGACCATACGCCATAACCGGGCGCGCGGTCGCCACCAAATCCACGCCATGTCAGAGATCGTCCGC
GAGCTGACCCAGCTCGGCTGGACGCCGCAGAAAATCGGCAAAGAGCTGGGGATGGATGCCGATGAAGTGCTGCGTCTGAA
GCAAATTAGCGGCCTGACAGAGATGTTCGCCGGCCGCCAGTTCTCCCAGGCGTGGACGATTAAGTAA

Upstream 100 bases:

>100_bases
ATTACTGGTGCCGTCAGCTTTCGTTTAGCCCAACCAAAAGCAGCCACTATCAGCGCTACCGTAAACGCATGGAAAAACAT
CGCCAACAATGGGGGATTTT

Downstream 100 bases:

>100_bases
CTACAGCTGGCACAAACGCGTCGCCGCAGCCAGCAGAGTCGCCGGCTGTTTGGCGAAGCACAAGCGGATCAGCTTGTGCG
GGAACGGATCGGCGCAGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MQQQLTQALEAYLQKLDDEARIEAINAFRQVLHHYSPFRSQPVDCVLWVKQELVAPNDYNPNNVAPPEKRLLQTSLEADG
FTQPVVVIQQRPQAYTIVDGFHRHELACSKAALKKTLKGYLPVTCLTSEAASRDGLMAATIRHNRARGRHQIHAMSEIVR
ELTQLGWTPQKIGKELGMDADEVLRLKQISGLTEMFAGRQFSQAWTIK

Sequences:

>Translated_208_residues
MQQQLTQALEAYLQKLDDEARIEAINAFRQVLHHYSPFRSQPVDCVLWVKQELVAPNDYNPNNVAPPEKRLLQTSLEADG
FTQPVVVIQQRPQAYTIVDGFHRHELACSKAALKKTLKGYLPVTCLTSEAASRDGLMAATIRHNRARGRHQIHAMSEIVR
ELTQLGWTPQKIGKELGMDADEVLRLKQISGLTEMFAGRQFSQAWTIK
>Mature_208_residues
MQQQLTQALEAYLQKLDDEARIEAINAFRQVLHHYSPFRSQPVDCVLWVKQELVAPNDYNPNNVAPPEKRLLQTSLEADG
FTQPVVVIQQRPQAYTIVDGFHRHELACSKAALKKTLKGYLPVTCLTSEAASRDGLMAATIRHNRARGRHQIHAMSEIVR
ELTQLGWTPQKIGKELGMDADEVLRLKQISGLTEMFAGRQFSQAWTIK

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786817, Length=208, Percent_Identity=65.8653846153846, Blast_Score=290, Evalue=4e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 23572; Mature: 23572

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQQLTQALEAYLQKLDDEARIEAINAFRQVLHHYSPFRSQPVDCVLWVKQELVAPNDYN
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC
PNNVAPPEKRLLQTSLEADGFTQPVVVIQQRPQAYTIVDGFHRHELACSKAALKKTLKGY
CCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHCC
LPVTCLTSEAASRDGLMAATIRHNRARGRHQIHAMSEIVRELTQLGWTPQKIGKELGMDA
CCCEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCH
DEVLRLKQISGLTEMFAGRQFSQAWTIK
HHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MQQQLTQALEAYLQKLDDEARIEAINAFRQVLHHYSPFRSQPVDCVLWVKQELVAPNDYN
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC
PNNVAPPEKRLLQTSLEADGFTQPVVVIQQRPQAYTIVDGFHRHELACSKAALKKTLKGY
CCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHCC
LPVTCLTSEAASRDGLMAATIRHNRARGRHQIHAMSEIVRELTQLGWTPQKIGKELGMDA
CCCEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCH
DEVLRLKQISGLTEMFAGRQFSQAWTIK
HHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]