Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 238893672

GI number: 238893672

Start: 1534478

End: 1535467

Strand: Reverse

Name: rbsC [H]

Synonym: KP1_1590

Alternate gene names: 238893672

Gene position: 1535467-1534478 (Counterclockwise)

Preceding gene: 238893673

Following gene: 238893671

Centisome position: 29.26

GC content: 65.96

Gene sequence:

>990_bases
ATGAGTACTGCTATCCAGCGTCGCGGCCGTCCGGGCCTGGCGACGCTGATTGAAAAATTTCCCCTGATCCTGTTTCTGGC
GCTGCTGGTATGGCTGAGCGTACAGTCGCCCTACTTTCTCAGCTGGCAAAATATCAGCCTGATGCTGGTCCAGAGCGTTC
CGCTGGCAATCCTCTGTTTCGGCCTGGTCTGCGTTATCGCCGTGGGCGGAGATGACGTGGTCTCCGGCGGCATCGACCTC
TCCCTGCCGGCGACGGCGGTGCTCGGCGTCGCGCTGCTCAGCCTCGGGCTGGCCGAATGGCACACGCCGTATCTCCTGCT
GCTGGCGCTGCTGGCGGCGGTTTGCCTGCTGTGCGGGGCGATCAATGGCTTGCTGGTGCTGGCGGCCGGCCTGCCGCCGC
TGCTGGCCACCCTCTCGACCTCGGTGGCGTTTACCGGTCTGACAGATCTGTTGACCGGCCAGCGGCGCATCGCGGTCAGC
GATCCGCTGATGGTCGCCTTTCGCGACAACAGCGTGCTGGGCCTGCCCTGGCCGCTGGTCTACCTGCTGGGGGTGTTTAT
CCTGTTCCAGTTCCTGCTCCACCACTCCCGCTTCGGCCAGCATGTGCAGGCGGTGGGCGGCAATCGCGATATGGCGCAGA
TGAGCGGCCTGAACGTGCGCCGCTTGACCCTGCTGGTCTGGCTGTTAGCGGGCATTGCCGCCGGGCTGGCTATTCTGCCG
CTGCTCAGCCAGGGCTCCGGCAGCTCCAGCGGGACGGCCACGCCGCTGCTGCTGGAGACCGTGCTGGCGACCTTTATCGG
CGCCGCCTTCTCGCGCCGTCGGGTGGTCACCATCTGGGGCGCGCTGCTGGGGGCAATCCTGGTCAACGCCCTCTCTAACG
GGCTCGGCCTGCTGGGGGTCAATATCTTCTGGATGGGCGCCATTAAAGGCGGCCTGATCCTGGTGGTGCTGGCGGCCTCG
GCGGTCAGACACAAAGGAGGCGAGGCATGA

Upstream 100 bases:

>100_bases
TGGTCCTCTGGCGCGGCACGCTGGCGGCCAATCTGCCCACCCGCGGGCTAACGCTGGACGCCCTGCTGGTGGCGATCAAC
GGCGGACAGGAGCCTTCACC

Downstream 100 bases:

>100_bases
GTCAAATCACCCTGAAAACCTCTGCGTCGGCGGAACAGACGGCCAGCAGCCCGCTGGCCTGGCTGTCGCGGGCCGGATTT
GGCGTCATCATCCTGCTGGC

Product: putative ABC-type sugar transport system permease component

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MSTAIQRRGRPGLATLIEKFPLILFLALLVWLSVQSPYFLSWQNISLMLVQSVPLAILCFGLVCVIAVGGDDVVSGGIDL
SLPATAVLGVALLSLGLAEWHTPYLLLLALLAAVCLLCGAINGLLVLAAGLPPLLATLSTSVAFTGLTDLLTGQRRIAVS
DPLMVAFRDNSVLGLPWPLVYLLGVFILFQFLLHHSRFGQHVQAVGGNRDMAQMSGLNVRRLTLLVWLLAGIAAGLAILP
LLSQGSGSSSGTATPLLLETVLATFIGAAFSRRRVVTIWGALLGAILVNALSNGLGLLGVNIFWMGAIKGGLILVVLAAS
AVRHKGGEA

Sequences:

>Translated_329_residues
MSTAIQRRGRPGLATLIEKFPLILFLALLVWLSVQSPYFLSWQNISLMLVQSVPLAILCFGLVCVIAVGGDDVVSGGIDL
SLPATAVLGVALLSLGLAEWHTPYLLLLALLAAVCLLCGAINGLLVLAAGLPPLLATLSTSVAFTGLTDLLTGQRRIAVS
DPLMVAFRDNSVLGLPWPLVYLLGVFILFQFLLHHSRFGQHVQAVGGNRDMAQMSGLNVRRLTLLVWLLAGIAAGLAILP
LLSQGSGSSSGTATPLLLETVLATFIGAAFSRRRVVTIWGALLGAILVNALSNGLGLLGVNIFWMGAIKGGLILVVLAAS
AVRHKGGEA
>Mature_328_residues
STAIQRRGRPGLATLIEKFPLILFLALLVWLSVQSPYFLSWQNISLMLVQSVPLAILCFGLVCVIAVGGDDVVSGGIDLS
LPATAVLGVALLSLGLAEWHTPYLLLLALLAAVCLLCGAINGLLVLAAGLPPLLATLSTSVAFTGLTDLLTGQRRIAVSD
PLMVAFRDNSVLGLPWPLVYLLGVFILFQFLLHHSRFGQHVQAVGGNRDMAQMSGLNVRRLTLLVWLLAGIAAGLAILPL
LSQGSGSSSGTATPLLLETVLATFIGAAFSRRRVVTIWGALLGAILVNALSNGLGLLGVNIFWMGAIKGGLILVVLAASA
VRHKGGEA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790524, Length=309, Percent_Identity=30.7443365695793, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788896, Length=307, Percent_Identity=28.0130293159609, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1790191, Length=313, Percent_Identity=29.073482428115, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI145693214, Length=254, Percent_Identity=29.9212598425197, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI145693152, Length=204, Percent_Identity=22.5490196078431, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082395, Length=318, Percent_Identity=24.2138364779874, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=33.5766423357664, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787794, Length=261, Percent_Identity=29.8850574712644, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34421; Mature: 34290

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAIQRRGRPGLATLIEKFPLILFLALLVWLSVQSPYFLSWQNISLMLVQSVPLAILCF
CCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCHHHHHHH
GLVCVIAVGGDDVVSGGIDLSLPATAVLGVALLSLGLAEWHTPYLLLLALLAAVCLLCGA
HHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
INGLLVLAAGLPPLLATLSTSVAFTGLTDLLTGQRRIAVSDPLMVAFRDNSVLGLPWPLV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCEECCCHHHH
YLLGVFILFQFLLHHSRFGQHVQAVGGNRDMAQMSGLNVRRLTLLVWLLAGIAAGLAILP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LLSQGSGSSSGTATPLLLETVLATFIGAAFSRRRVVTIWGALLGAILVNALSNGLGLLGV
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
NIFWMGAIKGGLILVVLAASAVRHKGGEA
HHHHHHHHCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
STAIQRRGRPGLATLIEKFPLILFLALLVWLSVQSPYFLSWQNISLMLVQSVPLAILCF
CCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCHHHHHHH
GLVCVIAVGGDDVVSGGIDLSLPATAVLGVALLSLGLAEWHTPYLLLLALLAAVCLLCGA
HHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
INGLLVLAAGLPPLLATLSTSVAFTGLTDLLTGQRRIAVSDPLMVAFRDNSVLGLPWPLV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCEECCCHHHH
YLLGVFILFQFLLHHSRFGQHVQAVGGNRDMAQMSGLNVRRLTLLVWLLAGIAAGLAILP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LLSQGSGSSSGTATPLLLETVLATFIGAAFSRRRVVTIWGALLGAILVNALSNGLGLLGV
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
NIFWMGAIKGGLILVVLAASAVRHKGGEA
HHHHHHHHCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]