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The map label for this gene is rbsC [H]

Identifier: 238893671

GI number: 238893671

Start: 1533477

End: 1534481

Strand: Reverse

Name: rbsC [H]

Synonym: KP1_1589

Alternate gene names: 238893671

Gene position: 1534481-1533477 (Counterclockwise)

Preceding gene: 238893672

Following gene: 238893670

Centisome position: 29.24

GC content: 64.88

Gene sequence:

>1005_bases
ATGAGTCAAATCACCCTGAAAACCTCTGCGTCGGCGGAACAGACGGCCAGCAGCCCGCTGGCCTGGCTGTCGCGGGCCGG
ATTTGGCGTCATCATCCTGCTGGCCATCGCCCTGTTTGGCTGGGCGAATCCGGTATTTTTAACCGTGGATAACTGGGCCA
ACCTGCTGCAGGGCAGCGCGATCCTGCTGATTGTGGCGATGGCGATGACCCTGATCGTCAGCGCCGGGGCGATTGATCTG
TCGGTGGGCGTCGCGCTCGATTTCGGCGCCGCCTTCGCCCTCGTCGCCCTGAAAACCTGGCATCTGCCGTGGCAGGCCGC
GGTGGGCTGCGCTCTGCTCGGCGGCGTGCTGATTGGCCTGCTCAATGCCTTTCTGATCCTCATCTGCCGGATCCGCCCCT
TCCTCGCCACGCTCGGCACCTGGTTTATCGCCAGCAGCGCCGAGCGCATCTATACCGACGGCGGCGGCGCGATAGCCTAT
CGGCGGATGGCTCCGGAGTATCACGACCTGGCGGTGGGCAACCTTGGTGGGATCCCCACGCCGGTAGCGATCGTGCTGGC
GCTGTGGCTGGCGGCCTGGCTGGTTACCGAGCGCACCCTGTGGGGCAAATATGTCCGCGCCATCGGCCAGAACAGCGAAG
CGGCACGTATCGCCGGGATCCGCGATCGCCTGACCATGCTCGGCGTGCTGGTGACCGCCTCGGCGCTCTGCGCCGTCGGC
GGGGTGATCCTCTCCGCCAACCTGCGGCAGTTTACCCCGCTGGCCGGGCAGTCTTACCTGATGGACGCCATTGCGGCAGT
ATTTATCGGCACTGCCTTTACCCGTCTGGGCCGGGTCAGCATCCTCGGCACCCTCGGCGGCGTGCTGTTCCTTGCCATTA
TTGATAACGGCCTGAACCTGATGGGGCTCAATTATCTGGTGAAGGACGCGCTGGTCGGCGTGATTCTGGTGGTGGCCCTC
GCCCTATCCTTCTGGCAGGCGCGCCTGCGCCAAACGCATCGCTAA

Upstream 100 bases:

>100_bases
GCCTGCTGGGGGTCAATATCTTCTGGATGGGCGCCATTAAAGGCGGCCTGATCCTGGTGGTGCTGGCGGCCTCGGCGGTC
AGACACAAAGGAGGCGAGGC

Downstream 100 bases:

>100_bases
ACGGGAGAACGATGGCAACCTTTGACGCCGTATTTGTCGGCCTGACTATTCTGGATATCGCCGGGCGCCCGGTGGTGGCG
ATCCCGCCGCGCGGCGGCGT

Product: putative ABC-type sugar transport system inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MSQITLKTSASAEQTASSPLAWLSRAGFGVIILLAIALFGWANPVFLTVDNWANLLQGSAILLIVAMAMTLIVSAGAIDL
SVGVALDFGAAFALVALKTWHLPWQAAVGCALLGGVLIGLLNAFLILICRIRPFLATLGTWFIASSAERIYTDGGGAIAY
RRMAPEYHDLAVGNLGGIPTPVAIVLALWLAAWLVTERTLWGKYVRAIGQNSEAARIAGIRDRLTMLGVLVTASALCAVG
GVILSANLRQFTPLAGQSYLMDAIAAVFIGTAFTRLGRVSILGTLGGVLFLAIIDNGLNLMGLNYLVKDALVGVILVVAL
ALSFWQARLRQTHR

Sequences:

>Translated_334_residues
MSQITLKTSASAEQTASSPLAWLSRAGFGVIILLAIALFGWANPVFLTVDNWANLLQGSAILLIVAMAMTLIVSAGAIDL
SVGVALDFGAAFALVALKTWHLPWQAAVGCALLGGVLIGLLNAFLILICRIRPFLATLGTWFIASSAERIYTDGGGAIAY
RRMAPEYHDLAVGNLGGIPTPVAIVLALWLAAWLVTERTLWGKYVRAIGQNSEAARIAGIRDRLTMLGVLVTASALCAVG
GVILSANLRQFTPLAGQSYLMDAIAAVFIGTAFTRLGRVSILGTLGGVLFLAIIDNGLNLMGLNYLVKDALVGVILVVAL
ALSFWQARLRQTHR
>Mature_333_residues
SQITLKTSASAEQTASSPLAWLSRAGFGVIILLAIALFGWANPVFLTVDNWANLLQGSAILLIVAMAMTLIVSAGAIDLS
VGVALDFGAAFALVALKTWHLPWQAAVGCALLGGVLIGLLNAFLILICRIRPFLATLGTWFIASSAERIYTDGGGAIAYR
RMAPEYHDLAVGNLGGIPTPVAIVLALWLAAWLVTERTLWGKYVRAIGQNSEAARIAGIRDRLTMLGVLVTASALCAVGG
VILSANLRQFTPLAGQSYLMDAIAAVFIGTAFTRLGRVSILGTLGGVLFLAIIDNGLNLMGLNYLVKDALVGVILVVALA
LSFWQARLRQTHR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=301, Percent_Identity=32.2259136212625, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1788896, Length=313, Percent_Identity=32.2683706070287, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1790524, Length=325, Percent_Identity=27.3846153846154, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787794, Length=307, Percent_Identity=29.3159609120521, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788471, Length=333, Percent_Identity=29.4294294294294, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693152, Length=334, Percent_Identity=25.748502994012, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693214, Length=253, Percent_Identity=31.6205533596838, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI87082395, Length=296, Percent_Identity=27.3648648648649, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1789992, Length=123, Percent_Identity=36.5853658536585, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35268; Mature: 35137

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQITLKTSASAEQTASSPLAWLSRAGFGVIILLAIALFGWANPVFLTVDNWANLLQGSA
CCCEEEECCCCHHHHHCCHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHCCHH
ILLIVAMAMTLIVSAGAIDLSVGVALDFGAAFALVALKTWHLPWQAAVGCALLGGVLIGL
HHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LNAFLILICRIRPFLATLGTWFIASSAERIYTDGGGAIAYRRMAPEYHDLAVGNLGGIPT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEHHHCCCCHHHCCCCCCCCCCH
PVAIVLALWLAAWLVTERTLWGKYVRAIGQNSEAARIAGIRDRLTMLGVLVTASALCAVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVILSANLRQFTPLAGQSYLMDAIAAVFIGTAFTRLGRVSILGTLGGVLFLAIIDNGLNL
HHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
MGLNYLVKDALVGVILVVALALSFWQARLRQTHR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQITLKTSASAEQTASSPLAWLSRAGFGVIILLAIALFGWANPVFLTVDNWANLLQGSA
CCEEEECCCCHHHHHCCHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHCCHH
ILLIVAMAMTLIVSAGAIDLSVGVALDFGAAFALVALKTWHLPWQAAVGCALLGGVLIGL
HHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LNAFLILICRIRPFLATLGTWFIASSAERIYTDGGGAIAYRRMAPEYHDLAVGNLGGIPT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEHHHCCCCHHHCCCCCCCCCCH
PVAIVLALWLAAWLVTERTLWGKYVRAIGQNSEAARIAGIRDRLTMLGVLVTASALCAVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVILSANLRQFTPLAGQSYLMDAIAAVFIGTAFTRLGRVSILGTLGGVLFLAIIDNGLNL
HHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
MGLNYLVKDALVGVILVVALALSFWQARLRQTHR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]