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The map label for this gene is rbsC [H]

Identifier: 238893655

GI number: 238893655

Start: 1514338

End: 1515336

Strand: Direct

Name: rbsC [H]

Synonym: KP1_1571

Alternate gene names: 238893655

Gene position: 1514338-1515336 (Clockwise)

Preceding gene: 238893654

Following gene: 238893656

Centisome position: 28.85

GC content: 61.66

Gene sequence:

>999_bases
GTGAGCAAGGCCCTGGCAGTGAACGCGACGGTATCGGGCCGTCAGCGATTTTTTGATTTTCTCTATAAGTGGGGCATGTT
GCTGACCGTGGTGCTGCTGGTGGCGGTCTTTGGCCTCGCCTCGGACAACTTCCTTGACCCGTTCAACATCATCAACATTC
TGCGCTCGATTGCCATCGTGACGGTGATTGCCATTGGGGTGTCGATTTCCCTCACCATCGGCGGCTTCGATCTGTCCGTC
GGATCGACGGCATCGCTGGCTAACGCGCTGGTGATTTCCCTGTTTGTCTGGCATGGCCTGGGGACCACCGAAGCGATTCT
GATAACCCTTGCGCTCTGCACCCTGGTGGGGCTGTTTAACGCCTTTCTGATCGTGGTGCTGCGCATTCCTGACATGCTCG
CCACCCTGGCCAGCCTGTTTGTGATTCAGGGCGTGGCAATGACCTACAGCTACGGTGGGTCGATTACCGAAAACATGGTT
CTGCCGAGCGGCGAGATGGCGGAGGGTACTATCCCGGCGGCCTTTGGCGCGCTGGGGCAGGTGCCGACCATCGTCATTAT
CATGCTGGTGGTGACGCTGGTCGCCCAGCTGGCGCTGTCGTTCACTACCCACGGACGGCGGATGTACGCCATCGGCGGCA
ACCCGGAGGCGGCGCGGCTCTCCGGCCTGCGGATCACGCGTTACAAAGTCGCAGCATACGTGATTGCCTCGCTGCTGGCC
GGGCTCGGCGGCATTCTGCTGGCCTCGCGCATCGGCTCTTCGCAGGTCAACGCCGGCGGCGGCTATCTGATGGACGCGGT
GGCCGCGGCCTGGATCGGCTTTTCGCTGGCGGGCTCCGGCAAACCAAACGCCCTGGGGACGCTGGTGGGGGCGGTGATCC
TCGGCGTGCTCTCCAACGGGCTGGTGATGCTCTCGGTGCCGTATTACGCGATGGACATTATTAAAGGGTTGGTGCTGGCT
GGCGCGCTGGCACTGACCTATTTTCAGCGCCGTACTTAA

Upstream 100 bases:

>100_bases
GCATCTGCGTACTGTGGGACGGACGGATCGTAGCGGAGATCCCCGGCGCGGAAGCCCGGGAAGAGACACTGCTTTATTAT
TCAACCGGAGGAGCGGCAGC

Downstream 100 bases:

>100_bases
CATTTTACAGGGTAAACCGCATGAAAAAGATCGCACTCTCTCTGATGACGCTGGGTCTGCTGCAGTCGACGGCGGCGCTG
GCCACCGCCCCGACGCCGGT

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MSKALAVNATVSGRQRFFDFLYKWGMLLTVVLLVAVFGLASDNFLDPFNIINILRSIAIVTVIAIGVSISLTIGGFDLSV
GSTASLANALVISLFVWHGLGTTEAILITLALCTLVGLFNAFLIVVLRIPDMLATLASLFVIQGVAMTYSYGGSITENMV
LPSGEMAEGTIPAAFGALGQVPTIVIIMLVVTLVAQLALSFTTHGRRMYAIGGNPEAARLSGLRITRYKVAAYVIASLLA
GLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLA
GALALTYFQRRT

Sequences:

>Translated_332_residues
MSKALAVNATVSGRQRFFDFLYKWGMLLTVVLLVAVFGLASDNFLDPFNIINILRSIAIVTVIAIGVSISLTIGGFDLSV
GSTASLANALVISLFVWHGLGTTEAILITLALCTLVGLFNAFLIVVLRIPDMLATLASLFVIQGVAMTYSYGGSITENMV
LPSGEMAEGTIPAAFGALGQVPTIVIIMLVVTLVAQLALSFTTHGRRMYAIGGNPEAARLSGLRITRYKVAAYVIASLLA
GLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLA
GALALTYFQRRT
>Mature_331_residues
SKALAVNATVSGRQRFFDFLYKWGMLLTVVLLVAVFGLASDNFLDPFNIINILRSIAIVTVIAIGVSISLTIGGFDLSVG
STASLANALVISLFVWHGLGTTEAILITLALCTLVGLFNAFLIVVLRIPDMLATLASLFVIQGVAMTYSYGGSITENMVL
PSGEMAEGTIPAAFGALGQVPTIVIIMLVVTLVAQLALSFTTHGRRMYAIGGNPEAARLSGLRITRYKVAAYVIASLLAG
LGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAG
ALALTYFQRRT

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=320, Percent_Identity=35.625, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1789992, Length=361, Percent_Identity=27.4238227146814, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI145693152, Length=330, Percent_Identity=30.3030303030303, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788896, Length=325, Percent_Identity=28, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1787793, Length=296, Percent_Identity=30.4054054054054, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790524, Length=303, Percent_Identity=26.4026402640264, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87082395, Length=250, Percent_Identity=29.6, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1788471, Length=333, Percent_Identity=28.5285285285285, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787794, Length=305, Percent_Identity=28.5245901639344, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI145693214, Length=258, Percent_Identity=30.6201550387597, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34525; Mature: 34393

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKALAVNATVSGRQRFFDFLYKWGMLLTVVLLVAVFGLASDNFLDPFNIINILRSIAIV
CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
TVIAIGVSISLTIGGFDLSVGSTASLANALVISLFVWHGLGTTEAILITLALCTLVGLFN
HHHHHHHEEEEEEECEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AFLIVVLRIPDMLATLASLFVIQGVAMTYSYGGSITENMVLPSGEMAEGTIPAAFGALGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
VPTIVIIMLVVTLVAQLALSFTTHGRRMYAIGGNPEAARLSGLRITRYKVAAYVIASLLA
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHH
GLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNG
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
LVMLSVPYYAMDIIKGLVLAGALALTYFQRRT
EEEEECHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKALAVNATVSGRQRFFDFLYKWGMLLTVVLLVAVFGLASDNFLDPFNIINILRSIAIV
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
TVIAIGVSISLTIGGFDLSVGSTASLANALVISLFVWHGLGTTEAILITLALCTLVGLFN
HHHHHHHEEEEEEECEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AFLIVVLRIPDMLATLASLFVIQGVAMTYSYGGSITENMVLPSGEMAEGTIPAAFGALGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
VPTIVIIMLVVTLVAQLALSFTTHGRRMYAIGGNPEAARLSGLRITRYKVAAYVIASLLA
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHH
GLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNG
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
LVMLSVPYYAMDIIKGLVLAGALALTYFQRRT
EEEEECHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]