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The map label for this gene is ybdB [H]

Identifier: 238893647

GI number: 238893647

Start: 1506747

End: 1507160

Strand: Direct

Name: ybdB [H]

Synonym: KP1_1562

Alternate gene names: 238893647

Gene position: 1506747-1507160 (Clockwise)

Preceding gene: 238893646

Following gene: 238893648

Centisome position: 28.71

GC content: 66.18

Gene sequence:

>414_bases
ATGGCCTGGAAGCGAGAGCTTACGCTGGCGGCGCTGAACGCCAGCAGCGAAAATACCCTGGTGGCGCATCTTGGCATCAT
CTACACCCGACTGGAAGAGGGGCTGCTGGAGGCGGAGATGCCGGTGGATGCGCGCACGCATCAGCCGTTTGGCCTGCTGC
ACGGCGGCGCTTCCGCGGCGCTGGCGGAGACGCTGGGCTCGATGGCCGGTTGGCTGATGACCGAAGAAGGGCAGTGCGTC
GTCGGGACTGAGCTTAACGCCAGCCATCACCGGGCCGTCTCCAGCGGGAAAGTGCGCGGCGAGTGCCGTCCGCTGCATCT
TGGCCGCCAGAGCCAGAGCTGGGAGATTGTGGTGTATGACGAGAAGGGGCGGCGCTGTTGCACCTGTCGTCTGGGCACCG
CGGTGCTGGGCTAA

Upstream 100 bases:

>100_bases
GGAGATCGCCAATACCATTCTGTTCCTCGCCTCTTCTCACGCCAGCCATATCACCCTGCAGGATATCGTGGTTGATGGCG
GCTCGACGCTGGGGGCGTAA

Downstream 100 bases:

>100_bases
GAAGCCGCTGTTTCCCCGGCTTGCGCTACGCTTAGCCGGGCTACGTATCGGCGCAATGGGGTAGCCCGGATAAGGCGCAG
CGCGCCGCCATCCGGGAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MAWKRELTLAALNASSENTLVAHLGIIYTRLEEGLLEAEMPVDARTHQPFGLLHGGASAALAETLGSMAGWLMTEEGQCV
VGTELNASHHRAVSSGKVRGECRPLHLGRQSQSWEIVVYDEKGRRCCTCRLGTAVLG

Sequences:

>Translated_137_residues
MAWKRELTLAALNASSENTLVAHLGIIYTRLEEGLLEAEMPVDARTHQPFGLLHGGASAALAETLGSMAGWLMTEEGQCV
VGTELNASHHRAVSSGKVRGECRPLHLGRQSQSWEIVVYDEKGRRCCTCRLGTAVLG
>Mature_136_residues
AWKRELTLAALNASSENTLVAHLGIIYTRLEEGLLEAEMPVDARTHQPFGLLHGGASAALAETLGSMAGWLMTEEGQCVV
GTELNASHHRAVSSGKVRGECRPLHLGRQSQSWEIVVYDEKGRRCCTCRLGTAVLG

Specific function: Displays esterase activity toward palmitoyl-CoA and pNP- butyrate [H]

COG id: COG2050

COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thioesterase PaaI family [H]

Homologues:

Organism=Escherichia coli, GI1786813, Length=137, Percent_Identity=81.7518248175183, Blast_Score=239, Evalue=3e-65,
Organism=Escherichia coli, GI1787976, Length=136, Percent_Identity=57.3529411764706, Blast_Score=164, Evalue=2e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003736
- InterPro:   IPR006683 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 14799; Mature: 14668

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWKRELTLAALNASSENTLVAHLGIIYTRLEEGLLEAEMPVDARTHQPFGLLHGGASAA
CCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHH
LAETLGSMAGWLMTEEGQCVVGTELNASHHRAVSSGKVRGECRPLHLGRQSQSWEIVVYD
HHHHHHHHHCEEECCCCCEEEECCCCCCHHHHCCCCCCCCCCEEEECCCCCCCEEEEEEC
EKGRRCCTCRLGTAVLG
CCCCEEEEEECCCEECC
>Mature Secondary Structure 
AWKRELTLAALNASSENTLVAHLGIIYTRLEEGLLEAEMPVDARTHQPFGLLHGGASAA
CCCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHH
LAETLGSMAGWLMTEEGQCVVGTELNASHHRAVSSGKVRGECRPLHLGRQSQSWEIVVYD
HHHHHHHHHCEEECCCCCEEEECCCCCCHHHHCCCCCCCCCCEEEECCCCCCCEEEEEEC
EKGRRCCTCRLGTAVLG
CCCCEEEEEECCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]