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The map label for this gene is rbsB [H]

Identifier: 238893627

GI number: 238893627

Start: 1482238

End: 1483173

Strand: Reverse

Name: rbsB [H]

Synonym: KP1_1541

Alternate gene names: 238893627

Gene position: 1483173-1482238 (Counterclockwise)

Preceding gene: 238893628

Following gene: 238893626

Centisome position: 28.26

GC content: 55.13

Gene sequence:

>936_bases
ATGAAATTACGTTTAACTCTTTTAACCGCTGCGACCCTGACCGCCTTCACCTTTGCCGCGCACGCCGCGGAGAAAGGCAC
CATTATGATCATGGTCAACTCGCTGGATAACCCGTATTACGCCTCGGAAGCCAAAGGCGCCAGCGAAAAAGCGCAAGCTC
TCGGCTACAAAACCACCGTGCTGTCCCATGGCGAAGATGTCAAAAAGCAGAATGAGCTTATCGACACCGCGATTGGTAAA
AAAGTGCAGGGCATTATTCTCGATAACGCTGACTCCACCGCCAGCGTCGCCGCCATTGAAAAAGCCAAAAAAGCGGGCAT
TCCGGTGGTCTTAATTAACCGCGAAATTCCGGTTGATGATGTGGCGCTGGAACAAATTACCCACAATAACTTCCAGGCCG
GCTCTGAGGTCGCCAACGTCTTCGTCGAGAAAATGGCGGAGAAAGGCAAATACGCCGAGCTGACCTGCAACCTCGCCGAT
AATAACTGCGTCACCCGTTCTAAATCTTTCCATCAGGTCATTGACCAGTATCCGGATATGGTCAGCGTGGCGAAACAGGA
TGCCAAAGGCACCCTGATCGACGGCAAGCGCATTATGGACAGCATTCTGCAGGCTCACCCGGACGTGAAAGGCGTCATCT
GTGGCAACGGGCCGGTAGCCCTCGGCGCGATTGCGGCGCTGAAAGCGGCCAACCGTAGCGATGTGATCGTCGTCGGCATC
GACGGCAGCAACGATGAGCGCGACGCCGTGAAAGCCGGCACCCTGCAGGCAACCGTGATGCTGCAGGCGCAGGCCATCGC
CGCTCAGGGCGTCACCGATCTGGATAACTACCTGCAAAAAGGCGAGAAGCCGGCGAAGCAGCGCGTGATGTTCCGCGGCA
TTCTGATTACTCAGGATAACGCCGATAAAGTCCAGGATTTCAACATTAAGTCCTGA

Upstream 100 bases:

>100_bases
ATATCGCTATCCCCGAATACATCAGGGGAAATTTCAGACCGTAAAAGCCTGCCCGCTCAGGGGCTCATTTGTTCGAATAT
AAAAATATAGGAACAGAGTC

Downstream 100 bases:

>100_bases
GTTCGGGTGGTTGCGCCCCTGCGGGGGCGCAGAGGAGAGCATTATGTTTAAGAAAACCTGTCTGACGCTGGCCGTACTGG
CGCTAGGGGGCTGTCGCATC

Product: putative ribose ABC transport system sugar-binding component

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MKLRLTLLTAATLTAFTFAAHAAEKGTIMIMVNSLDNPYYASEAKGASEKAQALGYKTTVLSHGEDVKKQNELIDTAIGK
KVQGIILDNADSTASVAAIEKAKKAGIPVVLINREIPVDDVALEQITHNNFQAGSEVANVFVEKMAEKGKYAELTCNLAD
NNCVTRSKSFHQVIDQYPDMVSVAKQDAKGTLIDGKRIMDSILQAHPDVKGVICGNGPVALGAIAALKAANRSDVIVVGI
DGSNDERDAVKAGTLQATVMLQAQAIAAQGVTDLDNYLQKGEKPAKQRVMFRGILITQDNADKVQDFNIKS

Sequences:

>Translated_311_residues
MKLRLTLLTAATLTAFTFAAHAAEKGTIMIMVNSLDNPYYASEAKGASEKAQALGYKTTVLSHGEDVKKQNELIDTAIGK
KVQGIILDNADSTASVAAIEKAKKAGIPVVLINREIPVDDVALEQITHNNFQAGSEVANVFVEKMAEKGKYAELTCNLAD
NNCVTRSKSFHQVIDQYPDMVSVAKQDAKGTLIDGKRIMDSILQAHPDVKGVICGNGPVALGAIAALKAANRSDVIVVGI
DGSNDERDAVKAGTLQATVMLQAQAIAAQGVTDLDNYLQKGEKPAKQRVMFRGILITQDNADKVQDFNIKS
>Mature_311_residues
MKLRLTLLTAATLTAFTFAAHAAEKGTIMIMVNSLDNPYYASEAKGASEKAQALGYKTTVLSHGEDVKKQNELIDTAIGK
KVQGIILDNADSTASVAAIEKAKKAGIPVVLINREIPVDDVALEQITHNNFQAGSEVANVFVEKMAEKGKYAELTCNLAD
NNCVTRSKSFHQVIDQYPDMVSVAKQDAKGTLIDGKRIMDSILQAHPDVKGVICGNGPVALGAIAALKAANRSDVIVVGI
DGSNDERDAVKAGTLQATVMLQAQAIAAQGVTDLDNYLQKGEKPAKQRVMFRGILITQDNADKVQDFNIKS

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=285, Percent_Identity=35.4385964912281, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1790526, Length=272, Percent_Identity=25, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788898, Length=250, Percent_Identity=26.8, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790674, Length=257, Percent_Identity=25.2918287937743, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33210; Mature: 33210

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRLTLLTAATLTAFTFAAHAAEKGTIMIMVNSLDNPYYASEAKGASEKAQALGYKTTV
CEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEECCCCCCCHHHHHHCCCCEEE
LSHGEDVKKQNELIDTAIGKKVQGIILDNADSTASVAAIEKAKKAGIPVVLINREIPVDD
ECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCH
VALEQITHNNFQAGSEVANVFVEKMAEKGKYAELTCNLADNNCVTRSKSFHQVIDQYPDM
HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCHH
VSVAKQDAKGTLIDGKRIMDSILQAHPDVKGVICGNGPVALGAIAALKAANRSDVIVVGI
HHHHHHCCCCEEECCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCCEEEEEE
DGSNDERDAVKAGTLQATVMLQAQAIAAQGVTDLDNYLQKGEKPAKQRVMFRGILITQDN
CCCCCCHHHHHHCCEEEEEEEEHHHHHHCCCHHHHHHHHCCCCCHHHHHHHEEEEEECCC
ADKVQDFNIKS
CCHHCCCCCCC
>Mature Secondary Structure
MKLRLTLLTAATLTAFTFAAHAAEKGTIMIMVNSLDNPYYASEAKGASEKAQALGYKTTV
CEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEECCCCCCCHHHHHHCCCCEEE
LSHGEDVKKQNELIDTAIGKKVQGIILDNADSTASVAAIEKAKKAGIPVVLINREIPVDD
ECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCH
VALEQITHNNFQAGSEVANVFVEKMAEKGKYAELTCNLADNNCVTRSKSFHQVIDQYPDM
HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCHH
VSVAKQDAKGTLIDGKRIMDSILQAHPDVKGVICGNGPVALGAIAALKAANRSDVIVVGI
HHHHHHCCCCEEECCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCCEEEEEE
DGSNDERDAVKAGTLQATVMLQAQAIAAQGVTDLDNYLQKGEKPAKQRVMFRGILITQDN
CCCCCCHHHHHHCCEEEEEEEEHHHHHHCCCHHHHHHHHCCCCCHHHHHHHEEEEEECCC
ADKVQDFNIKS
CCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]