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The map label for this gene is yjiR [C]

Identifier: 238893597

GI number: 238893597

Start: 1450874

End: 1452208

Strand: Direct

Name: yjiR [C]

Synonym: KP1_1510

Alternate gene names: 238893597

Gene position: 1450874-1452208 (Clockwise)

Preceding gene: 238893595

Following gene: 238893599

Centisome position: 27.64

GC content: 65.17

Gene sequence:

>1335_bases
ATGAAAGCCCGATATAAAGCCGTTGTCGACCGATATGCGCAGGCGATCCGCAGCGGGCAGCTGCCCGCCGGCAGCCGACT
GCCGACGCACCGTACCCTTGCCGCCGGGGAGCGCATCTCGCTGGCCACCGCTACGCGCGTCTATCGTGAACTGGAAGAGA
TGGGGCTGGTTAGCGGCGAAACCGGCCGCGGCACCTTCGTGCGCGACCTCTCGCTGCCGCCGGGGCATGGGGTCGATCAG
CAGGTGGTCGCCGCCGATGTCGTGGATCTCAATTTCAACTACCCTTCGCTGCCGGATCAGGGCGATGCGCTGCGCGAGGC
GCTCAGGCAGCTGGCGATGGCGGGCGATATTGACTCGCATCTGCGCTATCAGCCTCACGCCGGGCGGCTCGCCGAGCGGG
ACATTATCGCCCGCCATTTGACCTGCCAGCACTTTGCGCCGGACGCGGAAAATGTCCTGATCGTCAACGGCGCACAGCAC
GGGCTGGCGGTGACCGTCATGGGGCTGTTACGTCCGGGGGATGTGGTGGCGGTGGATGCGCTGACCTATTCGGGCTTCAA
AGTTCTGGCGGCGCTGTATCATCTGGAGCTGGCGGCGATCCCCTGTCGGCCGGAGGGACCGGACCTGCGGGCGCTTCATA
CGCTGTGCCAGCAGCGGCGGGTGCGGGCGGTGTATACCATGCCGACGCTGCACAATCCGCTGGGCTGGGTGCTCAACACC
GGGCAGCGGCAGGCGCTGGCCGATCTTGCGCGCCAGCACGATCTGCTGATTATTGAAGATGCCGCCTACGCCCGGCTGGT
GAGCCGTCCGCCGCCGCCGGTGGTCAGCTATGCGCCGGAAAGAACGGTGTATGTCACCGGATTTTCAAAAAATATCGCCA
CCGGACTGCGCGTGGGCGTGGTGATTTCTCCGCCGCGCTATCGCCCGGAGATTGAGCGCGCCATCCGGGCCACGACGTGG
AATACGCCGACGCTGATAAGTTCGCTGATCTGCGCCTGGATTGAAGATGGCACGGTGGCGCGCTTTGAAACGCAGAAACG
CCAGGATGCGCGACAGCGACAGCAGGTGGCCCGCGAGGTGCTTTGTGGGCTTCCCGTCGTCAGTCATCCCGATTCGTACT
TCGTCTGGCTGCCGCTGGATGAAGAGAGCCGGGCCGATCGGCTGGCGAATGCGCTGATGGAACGCCGCATTTCGGTATCG
ACCGCCGAGCCGTTCTGCGTCTCCGCCACGATCCCGCAGGCGCTGCGCATTGCGCTCGGATCGGTGCCTTTCGACAGCCT
GCGCCCGGCGCTGCTCAGCGTGCGCGACGCCGTTGAGTATGAACAATACCGCTAA

Upstream 100 bases:

>100_bases
GCGTTATCTGATTGGGCTGCGCCCGCTTGAGCATCGTCAGCGGCGATGGTAATGTGGCCAATCTAATACAATCAAATTAT
TGTCATAGATACATTTCACG

Downstream 100 bases:

>100_bases
CCCATCTGCTCCAGCTGGCCGCGCAGGACCTCCACCCCCTGGGCGATGGCGTCAGGGTTAATGGCGTGGAATCCCATGCG
AAAATAGTTATCCGGCGGCG

Product: putative aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MKARYKAVVDRYAQAIRSGQLPAGSRLPTHRTLAAGERISLATATRVYRELEEMGLVSGETGRGTFVRDLSLPPGHGVDQ
QVVAADVVDLNFNYPSLPDQGDALREALRQLAMAGDIDSHLRYQPHAGRLAERDIIARHLTCQHFAPDAENVLIVNGAQH
GLAVTVMGLLRPGDVVAVDALTYSGFKVLAALYHLELAAIPCRPEGPDLRALHTLCQQRRVRAVYTMPTLHNPLGWVLNT
GQRQALADLARQHDLLIIEDAAYARLVSRPPPPVVSYAPERTVYVTGFSKNIATGLRVGVVISPPRYRPEIERAIRATTW
NTPTLISSLICAWIEDGTVARFETQKRQDARQRQQVAREVLCGLPVVSHPDSYFVWLPLDEESRADRLANALMERRISVS
TAEPFCVSATIPQALRIALGSVPFDSLRPALLSVRDAVEYEQYR

Sequences:

>Translated_444_residues
MKARYKAVVDRYAQAIRSGQLPAGSRLPTHRTLAAGERISLATATRVYRELEEMGLVSGETGRGTFVRDLSLPPGHGVDQ
QVVAADVVDLNFNYPSLPDQGDALREALRQLAMAGDIDSHLRYQPHAGRLAERDIIARHLTCQHFAPDAENVLIVNGAQH
GLAVTVMGLLRPGDVVAVDALTYSGFKVLAALYHLELAAIPCRPEGPDLRALHTLCQQRRVRAVYTMPTLHNPLGWVLNT
GQRQALADLARQHDLLIIEDAAYARLVSRPPPPVVSYAPERTVYVTGFSKNIATGLRVGVVISPPRYRPEIERAIRATTW
NTPTLISSLICAWIEDGTVARFETQKRQDARQRQQVAREVLCGLPVVSHPDSYFVWLPLDEESRADRLANALMERRISVS
TAEPFCVSATIPQALRIALGSVPFDSLRPALLSVRDAVEYEQYR
>Mature_444_residues
MKARYKAVVDRYAQAIRSGQLPAGSRLPTHRTLAAGERISLATATRVYRELEEMGLVSGETGRGTFVRDLSLPPGHGVDQ
QVVAADVVDLNFNYPSLPDQGDALREALRQLAMAGDIDSHLRYQPHAGRLAERDIIARHLTCQHFAPDAENVLIVNGAQH
GLAVTVMGLLRPGDVVAVDALTYSGFKVLAALYHLELAAIPCRPEGPDLRALHTLCQQRRVRAVYTMPTLHNPLGWVLNT
GQRQALADLARQHDLLIIEDAAYARLVSRPPPPVVSYAPERTVYVTGFSKNIATGLRVGVVISPPRYRPEIERAIRATTW
NTPTLISSLICAWIEDGTVARFETQKRQDARQRQQVAREVLCGLPVVSHPDSYFVWLPLDEESRADRLANALMERRISVS
TAEPFCVSATIPQALRIALGSVPFDSLRPALLSVRDAVEYEQYR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=293, Percent_Identity=27.9863481228669, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI33469970, Length=293, Percent_Identity=27.9863481228669, Blast_Score=80, Evalue=4e-15,
Organism=Escherichia coli, GI1790797, Length=465, Percent_Identity=25.3763440860215, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI1787710, Length=450, Percent_Identity=26.4444444444444, Blast_Score=112, Evalue=6e-26,
Organism=Drosophila melanogaster, GI21356535, Length=355, Percent_Identity=24.7887323943662, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 49073; Mature: 49073

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKARYKAVVDRYAQAIRSGQLPAGSRLPTHRTLAAGERISLATATRVYRELEEMGLVSGE
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
TGRGTFVRDLSLPPGHGVDQQVVAADVVDLNFNYPSLPDQGDALREALRQLAMAGDIDSH
CCCCCEEEECCCCCCCCCCCHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHH
LRYQPHAGRLAERDIIARHLTCQHFAPDAENVLIVNGAQHGLAVTVMGLLRPGDVVAVDA
CEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEE
LTYSGFKVLAALYHLELAAIPCRPEGPDLRALHTLCQQRRVRAVYTMPTLHNPLGWVLNT
EHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCC
GQRQALADLARQHDLLIIEDAAYARLVSRPPPPVVSYAPERTVYVTGFSKNIATGLRVGV
CCHHHHHHHHHHCCEEEEECHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHCCEEEEE
VISPPRYRPEIERAIRATTWNTPTLISSLICAWIEDGTVARFETQKRQDARQRQQVAREV
EECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHH
LCGLPVVSHPDSYFVWLPLDEESRADRLANALMERRISVSTAEPFCVSATIPQALRIALG
HHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHC
SVPFDSLRPALLSVRDAVEYEQYR
CCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKARYKAVVDRYAQAIRSGQLPAGSRLPTHRTLAAGERISLATATRVYRELEEMGLVSGE
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
TGRGTFVRDLSLPPGHGVDQQVVAADVVDLNFNYPSLPDQGDALREALRQLAMAGDIDSH
CCCCCEEEECCCCCCCCCCCHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHH
LRYQPHAGRLAERDIIARHLTCQHFAPDAENVLIVNGAQHGLAVTVMGLLRPGDVVAVDA
CEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEE
LTYSGFKVLAALYHLELAAIPCRPEGPDLRALHTLCQQRRVRAVYTMPTLHNPLGWVLNT
EHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCC
GQRQALADLARQHDLLIIEDAAYARLVSRPPPPVVSYAPERTVYVTGFSKNIATGLRVGV
CCHHHHHHHHHHCCEEEEECHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHCCEEEEE
VISPPRYRPEIERAIRATTWNTPTLISSLICAWIEDGTVARFETQKRQDARQRQQVAREV
EECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHH
LCGLPVVSHPDSYFVWLPLDEESRADRLANALMERRISVSTAEPFCVSATIPQALRIALG
HHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHC
SVPFDSLRPALLSVRDAVEYEQYR
CCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]