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The map label for this gene is ygaE [H]

Identifier: 238893230

GI number: 238893230

Start: 1071586

End: 1072278

Strand: Reverse

Name: ygaE [H]

Synonym: KP1_1099

Alternate gene names: 238893230

Gene position: 1072278-1071586 (Counterclockwise)

Preceding gene: 238893231

Following gene: 238893226

Centisome position: 20.43

GC content: 62.48

Gene sequence:

>693_bases
ATGACCGCCATTCCCCAGGCGACGGCCATTGACGGATACCGTTGGTTAAAAAACGACATCATCCGCGGGGTTTACCACCC
CGATGAGAAGCTGCGGATGAGCCTGCTGACGTCACGCTATGGCCTGGGGGTCGGTCCGCTGCGCGAGGCGCTTTCGCAGC
TGGTGGCCGAGCGGCTGGTGACGGTGGTCAATCAGAAAGGCTATCGGGTAGCGCCCATGTCGGAACAGGAGCTTCTCGAT
ATCTTCGACGCGCGCGCCAACATGGAGGCCATGCTGGTGCGTCTCGCCATTGAACGCGGCGGCGACGAGTGGGAAGCCGA
GCTGCTGGCCCGCGCCCATCTGCTCAACAAGCTGGAGTCGTGCGAAGCGAGTGAGCACCTACTCGATGAATGGGACCAGC
GCCATCAGGCGTTTCACACCGCCATCGTCGCCGGCTGCGGTTCGCAGTATCTGCTGCAGATGCGCGAACGGCTGTTCGAT
CTGGCGGCGCGCTACCGCTTCATCTGGCTGCGCACCACCGTGCTGTCGGTGGAGATGCTGGAAGATAAGCATGTCCAGCA
TCAGACCCTGGTGGACGCTATTCTGGCGCGCGACGCCGAACAGGCCAGCGCGCTGATGCGTGAGCACTTACTGACTCCGA
TCCCGATTATTCAACAGGCGATGGCTGGCAAGCTGTCGCCGCAGGCAGGGTGA

Upstream 100 bases:

>100_bases
ACGCTGGAAAAAGCTGGTATTGTGGCAAAAACTGCCGCTGCAAAATACGCGTTAACCCTGTTCCCGGCGCCCGCCGGGAA
GAGTATTCAGGAGTAAGAAC

Downstream 100 bases:

>100_bases
GTCAGATGGAGGGGTGGAAATTACGGGTATGGCGGCACGCATCTCCACGCCGCACGGGCGTGGAGAAATCGTATCCGTAG
ATCAATCAGGCTCGCAGGCG

Product: DNA-binding transcriptional regulator CsiR

Products: NA

Alternate protein names: Carbon starvation induced regulator [H]

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MTAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLD
IFDARANMEAMLVRLAIERGGDEWEAELLARAHLLNKLESCEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFD
LAARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG

Sequences:

>Translated_230_residues
MTAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLD
IFDARANMEAMLVRLAIERGGDEWEAELLARAHLLNKLESCEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFD
LAARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
>Mature_229_residues
TAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLDI
FDARANMEAMLVRLAIERGGDEWEAELLARAHLLNKLESCEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDL
AARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG

Specific function: Modulates expression of csiD and lhgO in a temporal manner during entry into stationary phase or during the first few hours of carbon starvation [H]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=217, Percent_Identity=86.1751152073733, Blast_Score=387, Evalue=1e-109,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26081; Mature: 25950

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLV
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
TVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARAHLLNKLES
HHHHCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
CEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEML
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLV
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
TVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARAHLLNKLES
HHHHCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
CEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEML
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8297211; 7984428 [H]