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The map label for this gene is yfiE [H]

Identifier: 238893209

GI number: 238893209

Start: 1050880

End: 1051761

Strand: Reverse

Name: yfiE [H]

Synonym: KP1_1075

Alternate gene names: 238893209

Gene position: 1051761-1050880 (Counterclockwise)

Preceding gene: 238893211

Following gene: 238893207

Centisome position: 20.04

GC content: 58.39

Gene sequence:

>882_bases
ATGGATCTGCGACGCTTCATCACCTTCAAAACTGTTGTCGAAGAAGGTTCCTTTCTGTGCGCGGCGCAGAAACTATGCTG
CACTCAGTCCACCGTGACTTTTCATATCCAGCAGCTGGAGCAGGAGCTTGCCATTCCGCTGTTTGAGAAAATCGGCCGGC
GGATGTGTCTCACCGCCGCCGGTAAGAAGGTCCTGCCGCATGTCTACGACCTGACTAAAGTGATGGCCTCGATTCGTCAG
GCGGCACGCCAGGACGATGAGCCCGGCGGCGAACTTCGCGTCGCCACTGGCGAAACGCTGCTGGCGTATAAAATGCCGCG
GGTGCTGCAGCGTTTTAAGCAACGCGCTCCGAAAGTGCGCCTGTCGCTGCAGTCGCTCAACTGCTACAGCATCCGCGATG
CGTTGCTTGCCGACGAGGTCGATTTGGGGGTGTTTTACCGGGTGGGTAACGATGACGCGCTCACGATAATGGAGCTTGGC
CAGCAGTCGCTGACGCTGGTCGCATCGGTCGAGCAGGCGCCGGTAGACTTCATGCGCCCGCGGCAGCATATCCCGCTGAG
CTTTATCATCAACGAACCCCAGTGCGTGTTCCGGCAGATTTTTGAAAGCACCCTGCGCCAGCGCGAAATTACTCTGGAGA
ACACCATTGAGCTGTGGAGTATTGAGAGTATCAAGCAGTGCGTGGCGGGAAATCTGGGAGTGAGTTTTCTGCCACGCTTT
GCGGTGGAGGACGGGCTCAAGCGCGGGACGCTGGTTGAGCTGCCATTCAGCGAGACGCCATTGACGATCCATGCGCTCTG
CGCCCACCATGCCGGGAAGGCTATCAGTCCGGCGATGCGGGTATTTATGCAGTGCATGCAGGAGGAACAAGAGGCGCGCT
GA

Upstream 100 bases:

>100_bases
TTTTCTCCTCTTGTCTGGCAGACACTACCCGAAGCTGATAATTTAAAAAAATGAATATTTTTTCATTCTCGCTTCGATAA
TATCGATACAAAGAGGAAAT

Downstream 100 bases:

>100_bases
AATTCGGCGACGAAAACGACGAAAGCCTGAATCATTGCTGACTCAGGCTTTCTGAATAGTGGCGGAACGGACGGGACTCG
AACCCGCGACCCCCTGCGTG

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MDLRRFITFKTVVEEGSFLCAAQKLCCTQSTVTFHIQQLEQELAIPLFEKIGRRMCLTAAGKKVLPHVYDLTKVMASIRQ
AARQDDEPGGELRVATGETLLAYKMPRVLQRFKQRAPKVRLSLQSLNCYSIRDALLADEVDLGVFYRVGNDDALTIMELG
QQSLTLVASVEQAPVDFMRPRQHIPLSFIINEPQCVFRQIFESTLRQREITLENTIELWSIESIKQCVAGNLGVSFLPRF
AVEDGLKRGTLVELPFSETPLTIHALCAHHAGKAISPAMRVFMQCMQEEQEAR

Sequences:

>Translated_293_residues
MDLRRFITFKTVVEEGSFLCAAQKLCCTQSTVTFHIQQLEQELAIPLFEKIGRRMCLTAAGKKVLPHVYDLTKVMASIRQ
AARQDDEPGGELRVATGETLLAYKMPRVLQRFKQRAPKVRLSLQSLNCYSIRDALLADEVDLGVFYRVGNDDALTIMELG
QQSLTLVASVEQAPVDFMRPRQHIPLSFIINEPQCVFRQIFESTLRQREITLENTIELWSIESIKQCVAGNLGVSFLPRF
AVEDGLKRGTLVELPFSETPLTIHALCAHHAGKAISPAMRVFMQCMQEEQEAR
>Mature_293_residues
MDLRRFITFKTVVEEGSFLCAAQKLCCTQSTVTFHIQQLEQELAIPLFEKIGRRMCLTAAGKKVLPHVYDLTKVMASIRQ
AARQDDEPGGELRVATGETLLAYKMPRVLQRFKQRAPKVRLSLQSLNCYSIRDALLADEVDLGVFYRVGNDDALTIMELG
QQSLTLVASVEQAPVDFMRPRQHIPLSFIINEPQCVFRQIFESTLRQREITLENTIELWSIESIKQCVAGNLGVSFLPRF
AVEDGLKRGTLVELPFSETPLTIHALCAHHAGKAISPAMRVFMQCMQEEQEAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082132, Length=288, Percent_Identity=73.9583333333333, Blast_Score=444, Evalue=1e-126,
Organism=Escherichia coli, GI1788481, Length=287, Percent_Identity=26.8292682926829, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787806, Length=293, Percent_Identity=24.5733788395904, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI157672245, Length=167, Percent_Identity=32.3353293413174, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=27.2413793103448, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788748, Length=243, Percent_Identity=22.2222222222222, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI145693105, Length=263, Percent_Identity=22.0532319391635, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788887, Length=293, Percent_Identity=23.8907849829352, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787601, Length=254, Percent_Identity=22.8346456692913, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790208, Length=253, Percent_Identity=25.296442687747, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788296, Length=181, Percent_Identity=28.7292817679558, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33113; Mature: 33113

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLRRFITFKTVVEEGSFLCAAQKLCCTQSTVTFHIQQLEQELAIPLFEKIGRRMCLTAA
CCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
GKKVLPHVYDLTKVMASIRQAARQDDEPGGELRVATGETLLAYKMPRVLQRFKQRAPKVR
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEE
LSLQSLNCYSIRDALLADEVDLGVFYRVGNDDALTIMELGQQSLTLVASVEQAPVDFMRP
EEHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCHHHHHHHHHHHCCHHHHCC
RQHIPLSFIINEPQCVFRQIFESTLRQREITLENTIELWSIESIKQCVAGNLGVSFLPRF
CCCCCEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
AVEDGLKRGTLVELPFSETPLTIHALCAHHAGKAISPAMRVFMQCMQEEQEAR
HHHCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDLRRFITFKTVVEEGSFLCAAQKLCCTQSTVTFHIQQLEQELAIPLFEKIGRRMCLTAA
CCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
GKKVLPHVYDLTKVMASIRQAARQDDEPGGELRVATGETLLAYKMPRVLQRFKQRAPKVR
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEE
LSLQSLNCYSIRDALLADEVDLGVFYRVGNDDALTIMELGQQSLTLVASVEQAPVDFMRP
EEHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCHHHHHHHHHHHCCHHHHCC
RQHIPLSFIINEPQCVFRQIFESTLRQREITLENTIELWSIESIKQCVAGNLGVSFLPRF
CCCCCEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
AVEDGLKRGTLVELPFSETPLTIHALCAHHAGKAISPAMRVFMQCMQEEQEAR
HHHCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9205837 [H]