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The map label for this gene is ubiD [H]

Identifier: 238892439

GI number: 238892439

Start: 201963

End: 203438

Strand: Direct

Name: ubiD [H]

Synonym: KP1_0200

Alternate gene names: 238892439

Gene position: 201963-203438 (Clockwise)

Preceding gene: 238892437

Following gene: 238892440

Centisome position: 3.85

GC content: 56.84

Gene sequence:

>1476_bases
ATGAAATATCACGATCTTCGCGACTTTCTGACACTCCTGGAACAACAGGGCGAACTAAAACGTATCACTCTGCCGGTCGA
TCCTCACCTGGAAATCACCGAAATTGCCGACCGGACTCTGCGCGCCGGCGGCCCGGCGCTGCTGTTTGAGAATCCGAAAG
GCTATACCATGCCGGTGCTGTGCAATCTGTTCGGCACGCCGCGTCGCGTGGCGTTGGGGATGGGGCAGGAGGATGTCAGT
TCGCTGCGCGAGGTGGGTAAACTGTTGGCCTTTCTGAAAGAACCTGAGCCGCCAAAAGGCTTCCGCGACCTGTTTGATAA
GCTGCCGCAGTTCAAGCAAGTGCTGAATATGCCGACCAAACGCCTGCGCGGCGCCCCCTGTCAGCAAAAAATCATCCAGG
GCGATGATGTCGATCTGAATAAAATCCCGATTATGACCTGCTGGCCGGAAGATGCCGCGCCGCTGATCACCTGGGGGTTG
ACGGTAACCCGCGGGCCGCACAAAGAGCGGCAGAACCTGGGGATTTATCGCCAGCAGCTGATCGGCAAAAACAAACTGAT
TATGCGCTGGCTGTCTCATCGCGGCGGCGCGCTGGATTTCCAGGAGTGGTGCGCGGCGCGTCCGGGCGAACGCTTCCCGG
TTTCCGTGGCGCTTGGCGCCGATCCGGCAACCATTCTTGGCGCGGTGACGCCGGTGCCCGATACCCTGTCGGAATATGCC
TTCGCAGGCCTGCTGCGCGGCACCAAGACCGAAGTGGTTAAGTGCGTTTCCAATGACCTTGAAGTGCCGGCCAGCGCGGA
AATTGTGCTAGAAGGCTACATTGAGGCCGGTGAAATGGCGCCGGAAGGCCCGTATGGCGACCACACCGGTTACTACAATG
AAGTAGACCAGTTCCCGGTGTTTACGGTAACCCATATTACCCAGCGTGAAGACGCGATTTATCATTCTACCTATACCGGC
CGACCGCCCGATGAGCCAGCGGTACTGGGCGTGGCGCTGAATGAAGTCTTCGTCCCGATCCTGCAAAAGCAGTTCCCGGA
AATCGTTGATTTCTATCTGCCGCCGGAAGGGTGCTCCTATCGCCTGGCGGTGGTGACCATGAAAAAACAGTACGCGGGAC
ATGCCAAGCGCGTAATGATGGGCGTCTGGTCGTTCCTGCGCCAGTTTATGTACACCAAGTTCGTGATTGTCTGCGATGAC
GACGTCAATGCACGCGACTGGAACGATGTGATTTGGGCGATCACTACCCGTATGGACCCGGCTCGTGATACGGTACTGGT
AGAGAATACGCCAATTGATTATCTGGATTTTGCCTCGCCGGTTTCCGGCCTGGGTTCAAAAATGGGGCTGGATGCCACCA
ATAAATGGCCTGGCGAAACCCAGCGTGAATGGGGTCGCCCAATCAAAAAAGATCCTGCCGTTACGGCGCGTATTGACGCC
ATCTGGGATGAACTGGCCATCTTTAAACAACAGTAA

Upstream 100 bases:

>100_bases
CAAATTTCAGCGTTCTTTCACGCTAATTTAACAAAATTACAGCATCGCGCCGTCGAACACCGTATAATTAGCCGCCTGTA
GAGAGGTCAATAACACTTCC

Downstream 100 bases:

>100_bases
GCGGGGCTAACGCCGCTGTTTTGCTCTATTGACCCGACAGAGGGGACGCATGACAACCTTAAGCTGTAAAGTGACCTCGG
TGGAGGCGATTACCGATACC

Product: 3-octaprenyl-4-hydroxybenzoate decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MKYHDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYTMPVLCNLFGTPRRVALGMGQEDVS
SLREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIIQGDDVDLNKIPIMTCWPEDAAPLITWGL
TVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDFQEWCAARPGERFPVSVALGADPATILGAVTPVPDTLSEYA
FAGLLRGTKTEVVKCVSNDLEVPASAEIVLEGYIEAGEMAPEGPYGDHTGYYNEVDQFPVFTVTHITQREDAIYHSTYTG
RPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTMKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDD
DVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPAVTARIDA
IWDELAIFKQQ

Sequences:

>Translated_491_residues
MKYHDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYTMPVLCNLFGTPRRVALGMGQEDVS
SLREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIIQGDDVDLNKIPIMTCWPEDAAPLITWGL
TVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDFQEWCAARPGERFPVSVALGADPATILGAVTPVPDTLSEYA
FAGLLRGTKTEVVKCVSNDLEVPASAEIVLEGYIEAGEMAPEGPYGDHTGYYNEVDQFPVFTVTHITQREDAIYHSTYTG
RPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTMKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDD
DVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPAVTARIDA
IWDELAIFKQQ
>Mature_491_residues
MKYHDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYTMPVLCNLFGTPRRVALGMGQEDVS
SLREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIIQGDDVDLNKIPIMTCWPEDAAPLITWGL
TVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDFQEWCAARPGERFPVSVALGADPATILGAVTPVPDTLSEYA
FAGLLRGTKTEVVKCVSNDLEVPASAEIVLEGYIEAGEMAPEGPYGDHTGYYNEVDQFPVFTVTHITQREDAIYHSTYTG
RPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTMKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDD
DVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPAVTARIDA
IWDELAIFKQQ

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=490, Percent_Identity=95.9183673469388, Blast_Score=981, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=448, Percent_Identity=25.6696428571429, Blast_Score=139, Evalue=7e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 55188; Mature: 55188

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYHDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYTMPVL
CCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
CNLFGTPRRVALGMGQEDVSSLREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTK
HHHCCCCHHEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHH
RLRGAPCQQKIIQGDDVDLNKIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQL
HHCCCCHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEECEEECCCCCHHHHHHHHHHHHH
IGKNKLIMRWLSHRGGALDFQEWCAARPGERFPVSVALGADPATILGAVTPVPDTLSEYA
HCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCHHHHHHH
FAGLLRGTKTEVVKCVSNDLEVPASAEIVLEGYIEAGEMAPEGPYGDHTGYYNEVDQFPV
HHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCHHCCCE
FTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSY
EEEEEHHCCCCCEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHEECCCCCCCE
RLAVVTMKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDP
EEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEECCCC
ARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPAVTARIDA
CCCEEEEECCCCCHHHHHCHHHHCCHHCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHH
IWDELAIFKQQ
HHHHHHHHCCC
>Mature Secondary Structure
MKYHDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYTMPVL
CCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
CNLFGTPRRVALGMGQEDVSSLREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTK
HHHCCCCHHEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHH
RLRGAPCQQKIIQGDDVDLNKIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQL
HHCCCCHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEECEEECCCCCHHHHHHHHHHHHH
IGKNKLIMRWLSHRGGALDFQEWCAARPGERFPVSVALGADPATILGAVTPVPDTLSEYA
HCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCHHHHHHH
FAGLLRGTKTEVVKCVSNDLEVPASAEIVLEGYIEAGEMAPEGPYGDHTGYYNEVDQFPV
HHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCHHCCCE
FTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSY
EEEEEHHCCCCCEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHEECCCCCCCE
RLAVVTMKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDP
EEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEECCCC
ARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPAVTARIDA
CCCEEEEECCCCCHHHHHCHHHHCCHHCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHH
IWDELAIFKQQ
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA