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The map label for this gene is rdoA [H]

Identifier: 238892274

GI number: 238892274

Start: 22871

End: 23659

Strand: Direct

Name: rdoA [H]

Synonym: KP1_0019

Alternate gene names: 238892274

Gene position: 22871-23659 (Clockwise)

Preceding gene: 238892273

Following gene: 238892275

Centisome position: 0.44

GC content: 53.49

Gene sequence:

>789_bases
ATGCACGATAAGGCTTTTACTTTTCAGACGCTTCGCCCGGATACCATTATCGATGGGTTATTCGATCTGGGTATGCGGGT
GGACTCCGGTCTCACCCCGCTAAACAGCTATGAGAACCGCGTTTATCAGTTCCAGGACGAAGAGCGCCATCGCTATGTGG
TAAAGTTCTATCGTCCTGAGCGCTGGTCCGCAGAACAGATCCTTGAAGAACACCAGTTTGCGCTTCAGCTTGTAGAAGAT
GAAGTGCCCGTTGCTGCGCCGCTCTTATTTAATGACAGCACGCTTCATCAGCATCAGGGATTCTACTTTGCCGTTTTCCC
AAGCCTTGGCGGTCGTCAGTTCGAAGCGGATAACCTTGATCAGATGGAATGGGTTGGCCGCTACCTGGGGCGCCTGCACG
GTGACTGCCATGCCGGTAATATCCTCTGGCGCGACGGACCACTGTTTGTCGACTTAGACGATGCGCGCACCGGCCCGGCG
ATTCAGGATCTGTGGATGCTGCTCAACGGCGATAAGGCTGAACAGCGTATGCAGCTGGAGACTATTGTCGAGGCCTATGA
GGAATTCAGCCCCTTTAACAGCGATGAAATCGCGCTGATTGAACCTTTACGCGCTATGCGACTGGTTTATTATCTGGCGT
GGTTGCTCAGACGCTGGGACGATCCCGCTTTCCCGGTCAATTTCCCCTGGTTAACCGGGGAGGATTACTGGCGGGGGCAG
ACGTCGACTTTTCTTGAGCAGGTGAAGGTTCTACAGGAACCCCCGCTTCAGTTAACGCCAATGTATTAA

Upstream 100 bases:

>100_bases
CGCCCGCGGGGTAATAAAAGAGTAAAAGGTTGTAAGCGCTACCGCGTAAAGTGCAATGAGATGATATCCTGAACTATTCG
TACGATTATCGGATGTCAGG

Downstream 100 bases:

>100_bases
TGTGATATATCCAGGAGAGAGTAAATCATGAAAAAAGTTTGGCTGGCGCTGGCTGGTATGATTCTGGCTTTTAGTGCATC
CGCTGCCCAGATCACCGACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MHDKAFTFQTLRPDTIIDGLFDLGMRVDSGLTPLNSYENRVYQFQDEERHRYVVKFYRPERWSAEQILEEHQFALQLVED
EVPVAAPLLFNDSTLHQHQGFYFAVFPSLGGRQFEADNLDQMEWVGRYLGRLHGDCHAGNILWRDGPLFVDLDDARTGPA
IQDLWMLLNGDKAEQRMQLETIVEAYEEFSPFNSDEIALIEPLRAMRLVYYLAWLLRRWDDPAFPVNFPWLTGEDYWRGQ
TSTFLEQVKVLQEPPLQLTPMY

Sequences:

>Translated_262_residues
MHDKAFTFQTLRPDTIIDGLFDLGMRVDSGLTPLNSYENRVYQFQDEERHRYVVKFYRPERWSAEQILEEHQFALQLVED
EVPVAAPLLFNDSTLHQHQGFYFAVFPSLGGRQFEADNLDQMEWVGRYLGRLHGDCHAGNILWRDGPLFVDLDDARTGPA
IQDLWMLLNGDKAEQRMQLETIVEAYEEFSPFNSDEIALIEPLRAMRLVYYLAWLLRRWDDPAFPVNFPWLTGEDYWRGQ
TSTFLEQVKVLQEPPLQLTPMY
>Mature_262_residues
MHDKAFTFQTLRPDTIIDGLFDLGMRVDSGLTPLNSYENRVYQFQDEERHRYVVKFYRPERWSAEQILEEHQFALQLVED
EVPVAAPLLFNDSTLHQHQGFYFAVFPSLGGRQFEADNLDQMEWVGRYLGRLHGDCHAGNILWRDGPLFVDLDDARTGPA
IQDLWMLLNGDKAEQRMQLETIVEAYEEFSPFNSDEIALIEPLRAMRLVYYLAWLLRRWDDPAFPVNFPWLTGEDYWRGQ
TSTFLEQVKVLQEPPLQLTPMY

Specific function: Probably involved in the extracytoplasmic stress response [H]

COG id: COG2334

COG function: function code R; Putative homoserine kinase type II (protein kinase fold)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdoA family [H]

Homologues:

Organism=Escherichia coli, GI1790290, Length=132, Percent_Identity=87.1212121212121, Blast_Score=250, Evalue=7e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002575
- InterPro:   IPR011009 [H]

Pfam domain/function: PF01636 APH [H]

EC number: NA

Molecular weight: Translated: 30812; Mature: 30812

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDKAFTFQTLRPDTIIDGLFDLGMRVDSGLTPLNSYENRVYQFQDEERHRYVVKFYRPE
CCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHEEECCCCCCCEEEEEEECCC
RWSAEQILEEHQFALQLVEDEVPVAAPLLFNDSTLHQHQGFYFAVFPSLGGRQFEADNLD
CCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHCCEEEEEECCCCCCEECCCCCH
QMEWVGRYLGRLHGDCHAGNILWRDGPLFVDLDDARTGPAIQDLWMLLNGDKAEQRMQLE
HHHHHHHHHHHHCCCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHH
TIVEAYEEFSPFNSDEIALIEPLRAMRLVYYLAWLLRRWDDPAFPVNFPWLTGEDYWRGQ
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCC
TSTFLEQVKVLQEPPLQLTPMY
HHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MHDKAFTFQTLRPDTIIDGLFDLGMRVDSGLTPLNSYENRVYQFQDEERHRYVVKFYRPE
CCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHEEECCCCCCCEEEEEEECCC
RWSAEQILEEHQFALQLVEDEVPVAAPLLFNDSTLHQHQGFYFAVFPSLGGRQFEADNLD
CCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHCCEEEEEECCCCCCEECCCCCH
QMEWVGRYLGRLHGDCHAGNILWRDGPLFVDLDDARTGPAIQDLWMLLNGDKAEQRMQLE
HHHHHHHHHHHHCCCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHH
TIVEAYEEFSPFNSDEIALIEPLRAMRLVYYLAWLLRRWDDPAFPVNFPWLTGEDYWRGQ
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCC
TSTFLEQVKVLQEPPLQLTPMY
HHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]