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The map label for this gene is dapF [H]

Identifier: 238028905

GI number: 238028905

Start: 3831756

End: 3832622

Strand: Direct

Name: dapF [H]

Synonym: bglu_1g33700

Alternate gene names: 238028905

Gene position: 3831756-3832622 (Clockwise)

Preceding gene: 238028904

Following gene: 238028906

Centisome position: 98.09

GC content: 70.82

Gene sequence:

>867_bases
ATGAAACTTCCGTTCACCAAGATGCATGGCGCCGGCAACGACTTCGTCGTGCTCGACGGCACCGCCGGCGACCTCGGCCT
CACGCCCGAGCGCGTGCGCGCGCTCGCCGACCGCCATTTCGGCGTGGGTGCCGATCAGGTGCTGCTGGTCGAGCGGCCGA
CGCTCGACGGCGCCGATTTCCGCTACCGGATCTTCAACTGCGACGGCGGCGAAGTCGAGCATTGCGGCAACGGCGCGCGC
TGCTTCGTGAGGTTCGTGCACGACAAGGGCCTGACCGACAAGACGACGGTGCGCGTGCAGGTCAGCCACGGCCTGCTCAC
GCTGACGCTGCAGGAAAACGGCGAGGTGGTGGTGGACATGGGCTCGCCCGTGTTCGAGCCGGCCCGCGTGCCGTTCGACG
CCGCCGGCCTCGATGCCCGCCGCGAGGGCGCGGACACGCTGTTCCCGCTCGAGGTGGGCGGCACGACGCGCTGGATCTCG
GTGGTCTCGATGGGCAACCCGCACGCGGTGCAGGTGGTGGACGACGTCGAGACGTTCCCGGTAGCCGAGGAAGGCCCCTT
GGTCGAACACCATGCGCGCTTCCCGCAGCGCGTCAACGCCGGCTTCCTGCAGATCGTGTCGCGCCGCGAGGTGAAGCTGC
GCGTCTATGAACGCGGCGCCGGCGAGACGCTCGCCTGCGGCACCGGCGCCTGCGCGGCCGTGGCCGCCGGGATTCGCCGC
GGCCTGCTCGATTCGCCGGTGGCCGTGCAGACTCACGGCGGCGTCCTGACGATCGCCTGGGACGGCATGCGCGACGCCGC
CGCGCCGCTGTCGATGGCCGGCCCCGCCGTCACCGTGTTCGAAGGTGTCTTCGAACTGACCGCCTGA

Upstream 100 bases:

>100_bases
GAGCCGGGCTTTTACTGATCGTGATCGCGGGCGCGGCGGTGCCGGCTCGGCCGCCGCCGAGGTTCGCAAGCCGCGCCCGG
CGCGGCATACAATAACGCCC

Downstream 100 bases:

>100_bases
CCCTTTCGGCTTACCGCCCTCCTCGAACCACACTGCTCCATGAACGATCGCGACGTCGCCGACTACCTGCTCGCCAACCC
CGAATTCTTCGCCCGGCACG

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MKLPFTKMHGAGNDFVVLDGTAGDLGLTPERVRALADRHFGVGADQVLLVERPTLDGADFRYRIFNCDGGEVEHCGNGAR
CFVRFVHDKGLTDKTTVRVQVSHGLLTLTLQENGEVVVDMGSPVFEPARVPFDAAGLDARREGADTLFPLEVGGTTRWIS
VVSMGNPHAVQVVDDVETFPVAEEGPLVEHHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIRR
GLLDSPVAVQTHGGVLTIAWDGMRDAAAPLSMAGPAVTVFEGVFELTA

Sequences:

>Translated_288_residues
MKLPFTKMHGAGNDFVVLDGTAGDLGLTPERVRALADRHFGVGADQVLLVERPTLDGADFRYRIFNCDGGEVEHCGNGAR
CFVRFVHDKGLTDKTTVRVQVSHGLLTLTLQENGEVVVDMGSPVFEPARVPFDAAGLDARREGADTLFPLEVGGTTRWIS
VVSMGNPHAVQVVDDVETFPVAEEGPLVEHHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIRR
GLLDSPVAVQTHGGVLTIAWDGMRDAAAPLSMAGPAVTVFEGVFELTA
>Mature_288_residues
MKLPFTKMHGAGNDFVVLDGTAGDLGLTPERVRALADRHFGVGADQVLLVERPTLDGADFRYRIFNCDGGEVEHCGNGAR
CFVRFVHDKGLTDKTTVRVQVSHGLLTLTLQENGEVVVDMGSPVFEPARVPFDAAGLDARREGADTLFPLEVGGTTRWIS
VVSMGNPHAVQVVDDVETFPVAEEGPLVEHHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIRR
GLLDSPVAVQTHGGVLTIAWDGMRDAAAPLSMAGPAVTVFEGVFELTA

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=284, Percent_Identity=52.112676056338, Blast_Score=286, Evalue=1e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 30727; Mature: 30727

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLPFTKMHGAGNDFVVLDGTAGDLGLTPERVRALADRHFGVGADQVLLVERPTLDGADF
CCCCCCHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCE
RYRIFNCDGGEVEHCGNGARCFVRFVHDKGLTDKTTVRVQVSHGLLTLTLQENGEVVVDM
EEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCCEEEEC
GSPVFEPARVPFDAAGLDARREGADTLFPLEVGGTTRWISVVSMGNPHAVQVVDDVETFP
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCEEEEEEECCCCCC
VAEEGPLVEHHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIRR
CCCCCCCHHHHHCCCHHCCCHHHHHHHCCCEEEEEEECCCCCEEECCCCHHHHHHHHHHH
GLLDSPVAVQTHGGVLTIAWDGMRDAAAPLSMAGPAVTVFEGVFELTA
CCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKLPFTKMHGAGNDFVVLDGTAGDLGLTPERVRALADRHFGVGADQVLLVERPTLDGADF
CCCCCCHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCE
RYRIFNCDGGEVEHCGNGARCFVRFVHDKGLTDKTTVRVQVSHGLLTLTLQENGEVVVDM
EEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCCEEEEC
GSPVFEPARVPFDAAGLDARREGADTLFPLEVGGTTRWISVVSMGNPHAVQVVDDVETFP
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCEEEEEEECCCCCC
VAEEGPLVEHHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIRR
CCCCCCCHHHHHCCCHHCCCHHHHHHHCCCEEEEEEECCCCCEEECCCCHHHHHHHHHHH
GLLDSPVAVQTHGGVLTIAWDGMRDAAAPLSMAGPAVTVFEGVFELTA
CCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA