| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238028861
Identifier: 238028861
GI number: 238028861
Start: 3784427
End: 3784942
Strand: Reverse
Name: 238028861
Synonym: bglu_1g33260
Alternate gene names: NA
Gene position: 3784942-3784427 (Counterclockwise)
Preceding gene: 238028865
Following gene: 238028859
Centisome position: 96.89
GC content: 67.05
Gene sequence:
>516_bases ATGCCGCCGCGTCCCGCCACCAAGATCGTCTCGTCCGAACATCTCGTCTCCGAGACGAGCGCCGAATTGTCCGAACTCGA ATACGGGCTGATCACGGCGAGCAACGCGTTCAACCGCTGGATGGTGCGCTGCATGGCGGCCGCCGGCGCGAAGGACATGA CCGCCATCGAGGTCTCGCTGCTGCACTATGTCGGGCATCGCGACCGCAAGAAGAAGCTGGCCGACATCTGCTTCGTGCTC AATATCGAGGATACGCACGTTGCCACCTACGCGCTCAGGAAGCTGGCAGCGCGCGGCTACGTGGCGGGCGAGAAGTCGGG CAAGGAGGTGCTGTTCTCGGTCACGCCCGAGGGGCGCGTGCTGTGCGAGAAGTACCGCGAGGTGCGCGAGCACTGCCTGA TCGAGACGCTCAGGGACAGCGGGCTCACCAACGCGCAGATCGGCGAGGCCGCGCAGCTGCTGCGCCACGCCTCGGGGCTG TACGACACGGCCGCGCGCGCGGCCGCCTCGCTGTAG
Upstream 100 bases:
>100_bases AAATCGCCGACAAGCATATCCCCGCAAGTCGGTGGGTTTGCGGTTCTGGCGTACACTGCGGCTCATTTCTTTCCGAACCG CTTCTCCCGACGTACCCGAC
Downstream 100 bases:
>100_bases GCGCGCGGCCGGCCGCGCCGGGGCCGCCTCAGGCCGTCGAGCCCGAGCGGTAGGCGTGGCGCTCGGTGACGATCCAGTCG AGCGGCCGGTCGTGCGATTC
Product: MarR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator MarR Family; Transcription Regulator; MarR Family Regulatory Helix-Turn-Helix Protein; Transcription Regulator MarR-Type HTH Domain
Number of amino acids: Translated: 171; Mature: 170
Protein sequence:
>171_residues MPPRPATKIVSSEHLVSETSAELSELEYGLITASNAFNRWMVRCMAAAGAKDMTAIEVSLLHYVGHRDRKKKLADICFVL NIEDTHVATYALRKLAARGYVAGEKSGKEVLFSVTPEGRVLCEKYREVREHCLIETLRDSGLTNAQIGEAAQLLRHASGL YDTAARAAASL
Sequences:
>Translated_171_residues MPPRPATKIVSSEHLVSETSAELSELEYGLITASNAFNRWMVRCMAAAGAKDMTAIEVSLLHYVGHRDRKKKLADICFVL NIEDTHVATYALRKLAARGYVAGEKSGKEVLFSVTPEGRVLCEKYREVREHCLIETLRDSGLTNAQIGEAAQLLRHASGL YDTAARAAASL >Mature_170_residues PPRPATKIVSSEHLVSETSAELSELEYGLITASNAFNRWMVRCMAAAGAKDMTAIEVSLLHYVGHRDRKKKLADICFVLN IEDTHVATYALRKLAARGYVAGEKSGKEVLFSVTPEGRVLCEKYREVREHCLIETLRDSGLTNAQIGEAAQLLRHASGLY DTAARAAASL
Specific function: Unknown
COG id: COG5631
COG function: function code K; Predicted transcription regulator, contains HTH domain (MarR family)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18762; Mature: 18631
Theoretical pI: Translated: 7.99; Mature: 7.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPRPATKIVSSEHLVSETSAELSELEYGLITASNAFNRWMVRCMAAAGAKDMTAIEVSL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHCCCCCHHHHHHHH LHYVGHRDRKKKLADICFVLNIEDTHVATYALRKLAARGYVAGEKSGKEVLFSVTPEGRV HHHHCCCHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHH LCEKYREVREHCLIETLRDSGLTNAQIGEAAQLLRHASGLYDTAARAAASL HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCC >Mature Secondary Structure PPRPATKIVSSEHLVSETSAELSELEYGLITASNAFNRWMVRCMAAAGAKDMTAIEVSL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHCCCCCHHHHHHHH LHYVGHRDRKKKLADICFVLNIEDTHVATYALRKLAARGYVAGEKSGKEVLFSVTPEGRV HHHHCCCHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHH LCEKYREVREHCLIETLRDSGLTNAQIGEAAQLLRHASGLYDTAARAAASL HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA