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The map label for this gene is ycdJ [C]

Identifier: 238028798

GI number: 238028798

Start: 3713023

End: 3713919

Strand: Reverse

Name: ycdJ [C]

Synonym: bglu_1g32620

Alternate gene names: 238028798

Gene position: 3713919-3713023 (Counterclockwise)

Preceding gene: 238028800

Following gene: 238028793

Centisome position: 95.07

GC content: 68.23

Gene sequence:

>897_bases
ATGTCGTTTGACGAGTTCGCAGCGTTCAATGTAACGGTGCAGGATGTCGACATCTTCGGCGTCAAAGGAGGGACCGGTCC
ACCGCTGTTGCTGCTGCATGGGCATCCGCAGACTCACATGATCTGGCATCGTCTTGCCGCCGTGCTGGCCGAGCACTTCA
CCGTGATTGCCACCGACCTGCGCGGCTACGGCGCATCGGGCAAGCCGCGCGGCGATGCCGCCCACCAGACCTATTCGAAG
CGCACGATGGCGGCCGACCAGCTCGCCGTGATGCGCCATTTCGGCTATGAGCGCTTTCTGGTCTGTGCCCACGATCGCGG
CGCGCGCGTCGCGCACCGGATGGCGCTCGATCATCCCGATGCGGTCGAGCGCATGATGCTGCTCGACATCGCGCCCACGC
TCGCGATGTACGAGAAGACCGACCGCGCGTTCGCGACCGCCTATTTCCACTGGTTCTTCCTGATCCAGCCGGCGCCGCTG
CCGGAGACGCTGATCGGCGCGAACCCCGACGCCTACGTCGAGCGCGTGATGGGCAACCGCTCGGCCGGGCTCGCGCCGTT
CTCGCCGGCCGCCCTCGAGGCGTACCGTCACGCGCTGAAGCAGCCGGGCGCGGTGCATGCGATGTGCGAGGACTATCGCG
CCTCGGCGAGCATCGATCTCGAACACGATCGCGCCGATCTCGAGCGCGGCACCCGCCTCGGCTGTCCGCTGCGCGTGCTG
TGGGGCGCCCACGGCGTGGTGGCGCGCTGCTTCTCGCCGCTCGACGAATGGCGTGCGGTGGCGCGCGACGTGAGCGGGCG
CGCGCTCGACTGCGGGCATTACATTCCCGAGGAGGCGCCCGACGCGTTGCTCGCGGAGATGCTCGCGTTCTTCGAGGCGT
GCGAGCTCGGCACCTGA

Upstream 100 bases:

>100_bases
TGAGTGCTCGGCTTCTACGATTTGCGAGACGCGGCGGCTTTGCATCGCGGACCCGGCTTCTACAATGGCTGCTACAACAA
TCGAACAGAGAGACAGCGCC

Downstream 100 bases:

>100_bases
TGCGCGTGACGGGCCGCCGCCGCATCGCCGCCGCTGCTGCGAGCCTGGCCGCCGCGCGCGGCGCGACCGGCTCGCGAGCG
ATGCCGCGGCGGCGGCGCCG

Product: alpha/beta hydrolase fold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MSFDEFAAFNVTVQDVDIFGVKGGTGPPLLLLHGHPQTHMIWHRLAAVLAEHFTVIATDLRGYGASGKPRGDAAHQTYSK
RTMAADQLAVMRHFGYERFLVCAHDRGARVAHRMALDHPDAVERMMLLDIAPTLAMYEKTDRAFATAYFHWFFLIQPAPL
PETLIGANPDAYVERVMGNRSAGLAPFSPAALEAYRHALKQPGAVHAMCEDYRASASIDLEHDRADLERGTRLGCPLRVL
WGAHGVVARCFSPLDEWRAVARDVSGRALDCGHYIPEEAPDALLAEMLAFFEACELGT

Sequences:

>Translated_298_residues
MSFDEFAAFNVTVQDVDIFGVKGGTGPPLLLLHGHPQTHMIWHRLAAVLAEHFTVIATDLRGYGASGKPRGDAAHQTYSK
RTMAADQLAVMRHFGYERFLVCAHDRGARVAHRMALDHPDAVERMMLLDIAPTLAMYEKTDRAFATAYFHWFFLIQPAPL
PETLIGANPDAYVERVMGNRSAGLAPFSPAALEAYRHALKQPGAVHAMCEDYRASASIDLEHDRADLERGTRLGCPLRVL
WGAHGVVARCFSPLDEWRAVARDVSGRALDCGHYIPEEAPDALLAEMLAFFEACELGT
>Mature_297_residues
SFDEFAAFNVTVQDVDIFGVKGGTGPPLLLLHGHPQTHMIWHRLAAVLAEHFTVIATDLRGYGASGKPRGDAAHQTYSKR
TMAADQLAVMRHFGYERFLVCAHDRGARVAHRMALDHPDAVERMMLLDIAPTLAMYEKTDRAFATAYFHWFFLIQPAPLP
ETLIGANPDAYVERVMGNRSAGLAPFSPAALEAYRHALKQPGAVHAMCEDYRASASIDLEHDRADLERGTRLGCPLRVLW
GAHGVVARCFSPLDEWRAVARDVSGRALDCGHYIPEEAPDALLAEMLAFFEACELGT

Specific function: Catalyzes the hydrolytic defluorination of fluoroacetate to produce glycolate. Has low activity towards chloroacetate [H]

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Epoxide hydrolase family [H]

Homologues:

Organism=Homo sapiens, GI218777840, Length=278, Percent_Identity=29.136690647482, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI13376164, Length=278, Percent_Identity=29.136690647482, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI218777837, Length=232, Percent_Identity=25.4310344827586, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17554012, Length=286, Percent_Identity=21.6783216783217, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17562298, Length=213, Percent_Identity=24.8826291079812, Blast_Score=73, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR000639 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: =3.8.1.3 [H]

Molecular weight: Translated: 32895; Mature: 32764

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFDEFAAFNVTVQDVDIFGVKGGTGPPLLLLHGHPQTHMIWHRLAAVLAEHFTVIATDL
CCCCHHEEEEEEEEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHEEEHH
RGYGASGKPRGDAAHQTYSKRTMAADQLAVMRHFGYERFLVCAHDRGARVAHRMALDHPD
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCHH
AVERMMLLDIAPTLAMYEKTDRAFATAYFHWFFLIQPAPLPETLIGANPDAYVERVMGNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHCCCHHHHHHHHHCCC
SAGLAPFSPAALEAYRHALKQPGAVHAMCEDYRASASIDLEHDRADLERGTRLGCPLRVL
CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEECCCHHHHHCCCCCCCCCEEE
WGAHGVVARCFSPLDEWRAVARDVSGRALDCGHYIPEEAPDALLAEMLAFFEACELGT
CCCHHHHHHHHCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SFDEFAAFNVTVQDVDIFGVKGGTGPPLLLLHGHPQTHMIWHRLAAVLAEHFTVIATDL
CCCHHEEEEEEEEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHEEEHH
RGYGASGKPRGDAAHQTYSKRTMAADQLAVMRHFGYERFLVCAHDRGARVAHRMALDHPD
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCHH
AVERMMLLDIAPTLAMYEKTDRAFATAYFHWFFLIQPAPLPETLIGANPDAYVERVMGNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHCCCHHHHHHHHHCCC
SAGLAPFSPAALEAYRHALKQPGAVHAMCEDYRASASIDLEHDRADLERGTRLGCPLRVL
CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEECCCHHHHHCCCCCCCCCEEE
WGAHGVVARCFSPLDEWRAVARDVSGRALDCGHYIPEEAPDALLAEMLAFFEACELGT
CCCHHHHHHHHCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA