Click here to switch to the map view.

The map label for this gene is yhjC [C]

Identifier: 238028735

GI number: 238028735

Start: 3635500

End: 3636423

Strand: Direct

Name: yhjC [C]

Synonym: bglu_1g31990

Alternate gene names: 238028735

Gene position: 3635500-3636423 (Clockwise)

Preceding gene: 238028728

Following gene: 238028742

Centisome position: 93.06

GC content: 70.78

Gene sequence:

>924_bases
ATGGACCTGAACGCATTGACGCTGCTCGTCGAGATCCTCGACGCCGGCAATCTCAGCAATGCCGCGCGCCGGCTCAAGAT
GAGCCGCGCCAACGTCAGCTACCGGCTCAACCAGCTCGAGAAATCGGTCGGCCTGCAGCTGGTGCGGCGCACCACGCGGC
GCATCGAGCCGACCGAGGTGGCGCTGCGGCTCGTCGAGCACGGCCGGCGCATCCAGCACGAGCTGCTGGCCGCGCGCGAG
ACGGTGGCCACGCTCGGCCAGGAACTGCAGGGGCGCGTGCGGCTGTCGGTGCCCAGCGGCTATGGGCAGATCGTGATGTC
GGACTGGCTGATCGCGTTCAAGCGGCGCCACCCGGGCATCGTGCTCGACGTGGTGTTCGAGAACCGCGTCGAGGACCTGC
TGCGCGACGAGGTGGACATCGCCGTGCGCGTGCTGGCCGAGGCGCCGCAGAATCTGGTCGCGCGCGACATGGGCGCGGTG
CGCTACGTGGCCTGCGCGTCGCCCGAGTTCGCCGCGCGGCACGGCATGCCGGCCACGCTCGACGCGCTGGCCGACGCGCC
CGTGATCACCGCCACCGTGGTCGGGCGGCAGTTGCGGATCGCCGCCTATCTCGACGGCGAGCGTCACGAGGTGCTGCTCG
CGCCCACGCTGATCTCCGAGAATTTCCTGTTCCTGCGCCAGGCCGTGCTGGCCGGGCTCGGGGTGGGCATCGTGCCCGAC
TACGTGATCCACGACGACTGGCGCCGCGGCGCCGTGGTCACCACGCTCGACGCCTACCGGCTCAGCATCTTCGGCACGCG
CATGGCGCTGCTCTACATGCCGAACCGCCACCATACGCGCGCGATGGCCACCTTCATCGAGTTCATCCTCGACGAGGCGC
GCAAGTCCGGGCGCGCGGTCGACCCGCCCGGCGCCCCCGCTTGA

Upstream 100 bases:

>100_bases
GCGATGCCGTCGATTCTCGATTGATCGAGCGCGATTGACAATTTCAGGATCGTTTTACAAGCTGTCAAAGTTTTTTTGAC
AATCGGCGGTGGGCACCGTG

Downstream 100 bases:

>100_bases
GGCAGCGCGCCCGGATCCCGGGCGCAGCCCGCCGCGCGCGGCGGCCGGGCGATGTCAGGGCCGCGGCCGGTCGCGCGGCC
GATCCGACGCGCTTGCGCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MDLNALTLLVEILDAGNLSNAARRLKMSRANVSYRLNQLEKSVGLQLVRRTTRRIEPTEVALRLVEHGRRIQHELLAARE
TVATLGQELQGRVRLSVPSGYGQIVMSDWLIAFKRRHPGIVLDVVFENRVEDLLRDEVDIAVRVLAEAPQNLVARDMGAV
RYVACASPEFAARHGMPATLDALADAPVITATVVGRQLRIAAYLDGERHEVLLAPTLISENFLFLRQAVLAGLGVGIVPD
YVIHDDWRRGAVVTTLDAYRLSIFGTRMALLYMPNRHHTRAMATFIEFILDEARKSGRAVDPPGAPA

Sequences:

>Translated_307_residues
MDLNALTLLVEILDAGNLSNAARRLKMSRANVSYRLNQLEKSVGLQLVRRTTRRIEPTEVALRLVEHGRRIQHELLAARE
TVATLGQELQGRVRLSVPSGYGQIVMSDWLIAFKRRHPGIVLDVVFENRVEDLLRDEVDIAVRVLAEAPQNLVARDMGAV
RYVACASPEFAARHGMPATLDALADAPVITATVVGRQLRIAAYLDGERHEVLLAPTLISENFLFLRQAVLAGLGVGIVPD
YVIHDDWRRGAVVTTLDAYRLSIFGTRMALLYMPNRHHTRAMATFIEFILDEARKSGRAVDPPGAPA
>Mature_307_residues
MDLNALTLLVEILDAGNLSNAARRLKMSRANVSYRLNQLEKSVGLQLVRRTTRRIEPTEVALRLVEHGRRIQHELLAARE
TVATLGQELQGRVRLSVPSGYGQIVMSDWLIAFKRRHPGIVLDVVFENRVEDLLRDEVDIAVRVLAEAPQNLVARDMGAV
RYVACASPEFAARHGMPATLDALADAPVITATVVGRQLRIAAYLDGERHEVLLAPTLISENFLFLRQAVLAGLGVGIVPD
YVIHDDWRRGAVVTTLDAYRLSIFGTRMALLYMPNRHHTRAMATFIEFILDEARKSGRAVDPPGAPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=25.6756756756757, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=26.551724137931, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87081978, Length=258, Percent_Identity=27.5193798449612, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789639, Length=259, Percent_Identity=23.5521235521236, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789440, Length=258, Percent_Identity=24.031007751938, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787589, Length=286, Percent_Identity=22.027972027972, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788706, Length=174, Percent_Identity=28.735632183908, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=20.5479452054795, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34063; Mature: 34063

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNALTLLVEILDAGNLSNAARRLKMSRANVSYRLNQLEKSVGLQLVRRTTRRIEPTEV
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ALRLVEHGRRIQHELLAARETVATLGQELQGRVRLSVPSGYGQIVMSDWLIAFKRRHPGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE
VLDVVFENRVEDLLRDEVDIAVRVLAEAPQNLVARDMGAVRYVACASPEFAARHGMPATL
EEEHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCHHEEEEECCCHHHHHCCCCHHH
DALADAPVITATVVGRQLRIAAYLDGERHEVLLAPTLISENFLFLRQAVLAGLGVGIVPD
HHHCCCCHHHHHHHCCEEEEEEEECCCCCEEEEEEHHHHCHHHHHHHHHHHHCCCCCCCC
YVIHDDWRRGAVVTTLDAYRLSIFGTRMALLYMPNRHHTRAMATFIEFILDEARKSGRAV
HHCCCCCCCCCEEEEEHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
DPPGAPA
CCCCCCC
>Mature Secondary Structure
MDLNALTLLVEILDAGNLSNAARRLKMSRANVSYRLNQLEKSVGLQLVRRTTRRIEPTEV
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ALRLVEHGRRIQHELLAARETVATLGQELQGRVRLSVPSGYGQIVMSDWLIAFKRRHPGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE
VLDVVFENRVEDLLRDEVDIAVRVLAEAPQNLVARDMGAVRYVACASPEFAARHGMPATL
EEEHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCHHEEEEECCCHHHHHCCCCHHH
DALADAPVITATVVGRQLRIAAYLDGERHEVLLAPTLISENFLFLRQAVLAGLGVGIVPD
HHHCCCCHHHHHHHCCEEEEEEEECCCCCEEEEEEHHHHCHHHHHHHHHHHHCCCCCCCC
YVIHDDWRRGAVVTTLDAYRLSIFGTRMALLYMPNRHHTRAMATFIEFILDEARKSGRAV
HHCCCCCCCCCEEEEEHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
DPPGAPA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]