| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238028697
Identifier: 238028697
GI number: 238028697
Start: 3596248
End: 3596955
Strand: Reverse
Name: 238028697
Synonym: bglu_1g31610
Alternate gene names: NA
Gene position: 3596955-3596248 (Counterclockwise)
Preceding gene: 238028698
Following gene: 238028696
Centisome position: 92.08
GC content: 69.92
Gene sequence:
>708_bases GTGTCGACCCAGCCTTCCCGTCCGACGCCGGCCCGGCCTAGTCCCGACCACTCGCCTGACCGCCCGTCCGGCCAGGGTGG AACGGGTCGCGACCCCCATTCTGAGCGCGACACATCGTCGCAGCGCGGCTCGTGGCGCCGCGGGCGCTGGGTGGTGCTCG CGCTGTGCCTGATCTGCGCGGCGCCGCTCATCGCCTCCTACTTCACCTACTACGTGATCAAGCCCCGCGGCGCTTCGACC AACTACGGCACGCTGATCGAGCCGCAGCGGCCGATCCCCGCCACGCTCACGGCGACCGACGAAAACGGCCGAACCGTGGC GCTCGCCTCGCTGCGCGGGGTCTGGCTGCTCATGATGGAAAACGGCAGTTTGTGCGATGATGCGTGCGCCCGGAAGCTGT ACTTCATGCGGCAGGTCCGCGCGACGCAGGGCGGCGAGCGGCAGCGCATCACGATGGTCTGGCTGCGCCGCGACGCGGCG GCCATCGATGCGAGACTGCTGGCCGCCTATCCGGACACCCGGCGCCTGGTCGCCGATCCGGCCGCGCTCGACGCGTGGCT GCCGGCCGAGGCCGGCACGCAGGCGACGGATCACATCTATCTGGTGGACCCCAACGGCAACCTGATGATGCGCTTCCCGA AGGACCCCGACCCCAGCCGGATCAAGCACGACGTGACCAAGCTGCTCAAGTGGTCGAGCATCGGCTGA
Upstream 100 bases:
>100_bases CGGCGCGCGGCGCGCAAGCCTTCGGGCGCGACCTGAGCGCGCCACCGGCGGCGTTCGGCGCCGCGCCCCGCTCCCTATCC AGACGATGAAGAGGAATTTC
Downstream 100 bases:
>100_bases ACGGCCGGTACCCGCAATCGAGAACTCCCGGATGTACTTACTGCAACTGGGCCTGATCGGCCTCACCATCGCGCTGTTGC CCCTCTCCTACGTGTGGGTG
Product: hypothetical protein
Products: NA
Alternate protein names: Sco1/SenC Family Cytochrome Oxidase Assembly Protein
Number of amino acids: Translated: 235; Mature: 234
Protein sequence:
>235_residues MSTQPSRPTPARPSPDHSPDRPSGQGGTGRDPHSERDTSSQRGSWRRGRWVVLALCLICAAPLIASYFTYYVIKPRGAST NYGTLIEPQRPIPATLTATDENGRTVALASLRGVWLLMMENGSLCDDACARKLYFMRQVRATQGGERQRITMVWLRRDAA AIDARLLAAYPDTRRLVADPAALDAWLPAEAGTQATDHIYLVDPNGNLMMRFPKDPDPSRIKHDVTKLLKWSSIG
Sequences:
>Translated_235_residues MSTQPSRPTPARPSPDHSPDRPSGQGGTGRDPHSERDTSSQRGSWRRGRWVVLALCLICAAPLIASYFTYYVIKPRGAST NYGTLIEPQRPIPATLTATDENGRTVALASLRGVWLLMMENGSLCDDACARKLYFMRQVRATQGGERQRITMVWLRRDAA AIDARLLAAYPDTRRLVADPAALDAWLPAEAGTQATDHIYLVDPNGNLMMRFPKDPDPSRIKHDVTKLLKWSSIG >Mature_234_residues STQPSRPTPARPSPDHSPDRPSGQGGTGRDPHSERDTSSQRGSWRRGRWVVLALCLICAAPLIASYFTYYVIKPRGASTN YGTLIEPQRPIPATLTATDENGRTVALASLRGVWLLMMENGSLCDDACARKLYFMRQVRATQGGERQRITMVWLRRDAAA IDARLLAAYPDTRRLVADPAALDAWLPAEAGTQATDHIYLVDPNGNLMMRFPKDPDPSRIKHDVTKLLKWSSIG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26027; Mature: 25896
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTQPSRPTPARPSPDHSPDRPSGQGGTGRDPHSERDTSSQRGSWRRGRWVVLALCLICA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH APLIASYFTYYVIKPRGASTNYGTLIEPQRPIPATLTATDENGRTVALASLRGVWLLMME HHHHHHHHEEEEECCCCCCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC NGSLCDDACARKLYFMRQVRATQGGERQRITMVWLRRDAAAIDARLLAAYPDTRRLVADP CCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCHHHHHHHHEEECCCCCCEEECC AALDAWLPAEAGTQATDHIYLVDPNGNLMMRFPKDPDPSRIKHDVTKLLKWSSIG HHHHCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure STQPSRPTPARPSPDHSPDRPSGQGGTGRDPHSERDTSSQRGSWRRGRWVVLALCLICA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH APLIASYFTYYVIKPRGASTNYGTLIEPQRPIPATLTATDENGRTVALASLRGVWLLMME HHHHHHHHEEEEECCCCCCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC NGSLCDDACARKLYFMRQVRATQGGERQRITMVWLRRDAAAIDARLLAAYPDTRRLVADP CCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCHHHHHHHHEEECCCCCCEEECC AALDAWLPAEAGTQATDHIYLVDPNGNLMMRFPKDPDPSRIKHDVTKLLKWSSIG HHHHCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA