| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is nagA [H]
Identifier: 238028688
GI number: 238028688
Start: 3584069
End: 3585172
Strand: Reverse
Name: nagA [H]
Synonym: bglu_1g31520
Alternate gene names: 238028688
Gene position: 3585172-3584069 (Counterclockwise)
Preceding gene: 238028689
Following gene: 238028687
Centisome position: 91.77
GC content: 70.2
Gene sequence:
>1104_bases ATGCTGACCGGAAACCTACTGACCGCCGAAGGCTGGCGCTACGGCACGATCGAGTTCGGCAACGGCCGGATCACCGCGCT GTCGGGCCATGCCGTCGACCCGTCGATGAACGACGCGCCGTACATCGTGCCGGGCTTCATCGACCTGCACGTGCATGGCG GCGGCGGAGCCGACGTGATGGAGGGCGGCGACGCGATCGAGACCATCGGCCGGACCCACGCCCGCTACGGCACCACCAGC CTGCTCGCCACCACCATGACGGCGCCGCGCGACGAACTGATGAAGGTGGTCGCGCAGCTCGGCGAGCGCGCGCGCAACCG CACGCCGGGCTGCGCGCGCGTGCTCGGCGTCCATCTCGAAGGCCCTTACATCAACCCCGGCAAGCTCGGCGCGCAGCCCG ACGCGGCGGTATCGGCCGCGCTCGACGAGGTGCTGCGCTATCTCGCGATCGCGCCGATCCGCGTGGTCACGCTCGCGCCC GAGATCGCCGGCCACATCGAGATCATCTCGGAGATGGCCGCGCGCGGCGTGCGCGTGCAGCTCGGCCATTCGCTCGCCAC CTATGAGGAGGGCGTCGCCGCGCTCAAGCATGGCGCCTGCGGCTTCACGCACCTGTTCAACGCGATGTCGCCGCTGCACC ACCGCAACCCCGGTCTGGTCGGCGCCGCGCTCGCCCATGCCGAGTACGCGGAGATCATCCCCGACCTGCTGCACGTCCAT CCCGGTGCGATCCGCGCCGCGCTGCGCGCGATCCCGCGCCTGTACGTGGTGACCGACAGCACCTCGGCCACCGGCATGCC CGACGGCGAATACCGGCTCGGCAGCCAGCACGTCACCAAGTGTCTCGGCGGCGTGCGGCTGGCCGACGGCACGCTGGCCG GCAGCACGCTGACGATGGACCAGGCGTTCCGCAACCTGGTGTCGATCGGGCTGCCGATCGCCGACGTATCGAACCGGATG TCGCGCTTCGCCGCCGACTATCTCGGCCTCGAGGATCGCGGCCGCCTCGCGCGCGGCGCCTGGGCCGACATCGCCGTGTT CGACCGCGACCTGAACCTGAGCGCGACCTACGTCGAAGGAGAATCGATTGTCGAATATGCTTGA
Upstream 100 bases:
>100_bases TGGTTATATAATCAGCTCGCTTCGGCCGGGGGCGAGCCCGTCGCGGCCCGCCGGCCGGCCTTCTCTCGCAACCCGCATGA CCCGGATACAAGTGAACGAG
Downstream 100 bases:
>100_bases AGAGGCGCGCGAAGCGTCCCGCGTGGTCGCCGCGCAACTGGCCGACACCTCGCGCCTGGAGGCGCTCGCCGAGCGCCTGC TCGCCGCACCGCCGCAGGTG
Product: N-acetylglucosamine-6-phosphate deacetylase
Products: NA
Alternate protein names: GlcNAc 6-P deacetylase [H]
Number of amino acids: Translated: 367; Mature: 367
Protein sequence:
>367_residues MLTGNLLTAEGWRYGTIEFGNGRITALSGHAVDPSMNDAPYIVPGFIDLHVHGGGGADVMEGGDAIETIGRTHARYGTTS LLATTMTAPRDELMKVVAQLGERARNRTPGCARVLGVHLEGPYINPGKLGAQPDAAVSAALDEVLRYLAIAPIRVVTLAP EIAGHIEIISEMAARGVRVQLGHSLATYEEGVAALKHGACGFTHLFNAMSPLHHRNPGLVGAALAHAEYAEIIPDLLHVH PGAIRAALRAIPRLYVVTDSTSATGMPDGEYRLGSQHVTKCLGGVRLADGTLAGSTLTMDQAFRNLVSIGLPIADVSNRM SRFAADYLGLEDRGRLARGAWADIAVFDRDLNLSATYVEGESIVEYA
Sequences:
>Translated_367_residues MLTGNLLTAEGWRYGTIEFGNGRITALSGHAVDPSMNDAPYIVPGFIDLHVHGGGGADVMEGGDAIETIGRTHARYGTTS LLATTMTAPRDELMKVVAQLGERARNRTPGCARVLGVHLEGPYINPGKLGAQPDAAVSAALDEVLRYLAIAPIRVVTLAP EIAGHIEIISEMAARGVRVQLGHSLATYEEGVAALKHGACGFTHLFNAMSPLHHRNPGLVGAALAHAEYAEIIPDLLHVH PGAIRAALRAIPRLYVVTDSTSATGMPDGEYRLGSQHVTKCLGGVRLADGTLAGSTLTMDQAFRNLVSIGLPIADVSNRM SRFAADYLGLEDRGRLARGAWADIAVFDRDLNLSATYVEGESIVEYA >Mature_367_residues MLTGNLLTAEGWRYGTIEFGNGRITALSGHAVDPSMNDAPYIVPGFIDLHVHGGGGADVMEGGDAIETIGRTHARYGTTS LLATTMTAPRDELMKVVAQLGERARNRTPGCARVLGVHLEGPYINPGKLGAQPDAAVSAALDEVLRYLAIAPIRVVTLAP EIAGHIEIISEMAARGVRVQLGHSLATYEEGVAALKHGACGFTHLFNAMSPLHHRNPGLVGAALAHAEYAEIIPDLLHVH PGAIRAALRAIPRLYVVTDSTSATGMPDGEYRLGSQHVTKCLGGVRLADGTLAGSTLTMDQAFRNLVSIGLPIADVSNRM SRFAADYLGLEDRGRLARGAWADIAVFDRDLNLSATYVEGESIVEYA
Specific function: N-acetylglucosamine utilization. [C]
COG id: COG1820
COG function: function code G; N-acetylglucosamine-6-phosphate deacetylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nagA family [H]
Homologues:
Organism=Homo sapiens, GI21361513, Length=373, Percent_Identity=34.5844504021448, Blast_Score=166, Evalue=3e-41, Organism=Homo sapiens, GI224922791, Length=368, Percent_Identity=34.7826086956522, Blast_Score=164, Evalue=2e-40, Organism=Escherichia coli, GI1786892, Length=346, Percent_Identity=35.2601156069364, Blast_Score=151, Evalue=6e-38, Organism=Caenorhabditis elegans, GI17553768, Length=343, Percent_Identity=33.5276967930029, Blast_Score=154, Evalue=6e-38, Organism=Drosophila melanogaster, GI19920392, Length=341, Percent_Identity=35.1906158357771, Blast_Score=175, Evalue=4e-44, Organism=Drosophila melanogaster, GI281361140, Length=356, Percent_Identity=33.7078651685393, Blast_Score=170, Evalue=2e-42,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006680 - InterPro: IPR003764 - InterPro: IPR011059 [H]
Pfam domain/function: PF01979 Amidohydro_1 [H]
EC number: =3.5.1.25 [H]
Molecular weight: Translated: 38869; Mature: 38869
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTGNLLTAEGWRYGTIEFGNGRITALSGHAVDPSMNDAPYIVPGFIDLHVHGGGGADVM CCCCCEEEECCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCEEEEEEECCCCCCHH EGGDAIETIGRTHARYGTTSLLATTMTAPRDELMKVVAQLGERARNRTPGCARVLGVHLE CCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEC GPYINPGKLGAQPDAAVSAALDEVLRYLAIAPIRVVTLAPEIAGHIEIISEMAARGVRVQ CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHCCEEEE LGHSLATYEEGVAALKHGACGFTHLFNAMSPLHHRNPGLVGAALAHAEYAEIIPDLLHVH ECCCHHHHHHHHHHHHCCCCHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC PGAIRAALRAIPRLYVVTDSTSATGMPDGEYRLGSQHVTKCLGGVRLADGTLAGSTLTMD CHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCEEEHH QAFRNLVSIGLPIADVSNRMSRFAADYLGLEDRGRLARGAWADIAVFDRDLNLSATYVEG HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECC ESIVEYA CHHHCCC >Mature Secondary Structure MLTGNLLTAEGWRYGTIEFGNGRITALSGHAVDPSMNDAPYIVPGFIDLHVHGGGGADVM CCCCCEEEECCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEECCEEEEEEECCCCCCHH EGGDAIETIGRTHARYGTTSLLATTMTAPRDELMKVVAQLGERARNRTPGCARVLGVHLE CCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEC GPYINPGKLGAQPDAAVSAALDEVLRYLAIAPIRVVTLAPEIAGHIEIISEMAARGVRVQ CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHCCEEEE LGHSLATYEEGVAALKHGACGFTHLFNAMSPLHHRNPGLVGAALAHAEYAEIIPDLLHVH ECCCHHHHHHHHHHHHCCCCHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC PGAIRAALRAIPRLYVVTDSTSATGMPDGEYRLGSQHVTKCLGGVRLADGTLAGSTLTMD CHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCEEEHH QAFRNLVSIGLPIADVSNRMSRFAADYLGLEDRGRLARGAWADIAVFDRDLNLSATYVEG HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECC ESIVEYA CHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA