| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238028665
Identifier: 238028665
GI number: 238028665
Start: 3556819
End: 3558663
Strand: Direct
Name: 238028665
Synonym: bglu_1g31290
Alternate gene names: NA
Gene position: 3556819-3558663 (Clockwise)
Preceding gene: 238028662
Following gene: 238028666
Centisome position: 91.05
GC content: 69.97
Gene sequence:
>1845_bases ATGACCTTGCCCTCGACGCTGTCCCCGAAGCGCTCCGCCGCCCGCGCGCGCCGCGCGTTCGCCTTTCCGGTTCGCCGCGC CCTCGGCGCCGCGCTTGTCGCCGCTTGGACGTTCGGCGCGGTTGCCGCGCATGCCCAGACTCCCGCCGACGCACCGGCTG CCGGCGCGTCCGACGCGCTGGCGCAAAGCGCGTTCTCGCCGGCCTTTCCCGAAGAGAAAAAGGATCTGCCGAACGTGCCG CTGACGGCGCAGATCGTCTACCAGGTGCTCGCGGCCGAGGTCGCGCTGCAGCGCTCGCAGCCGGCGCCCGCATACCAGAC CTACCTCGCGCTGGCACGCGACACGAAGGACCCGCGCATGGCGCAGCGGGCCACCGAGATCGCGCTGGCGGCCCAGAGCC CGGCCGACGCGCTTGCCGCGGCAAATCTGTGGCGCCAGTTCGCGCCCGACTCGAACCGCGCCTCGCAGGTCGACTCGGCG CTGCTGGTGCTGGCCGGCAAGCCGGCCGAAGCCGAGCCGCTGCTCGCGCGCGAGCTCGCGCGCGCCAACGGCGAGAATCG CGGCGACGCGCTGCTCGCGCTGCAGGCGCTGATTTCGCGCGGCCCGAACCGGGTCGAGGGCCTGACGGTGCTGCAGGATC TGCTCAAGAACGACCTCGATCGCCCCGAGGCGCAGCTGGCCATCGCACGCCAGCAGCTCGCCACCGACGACCGGGCGGGC GCCGTCGCCTCGCTGAAGCAGGCGCTGAAGTTGCGGCCCGACTACCTGCCGGCGGCCCTGATGCTCTCGCAGATGGGTCC CGACGAGCGCGCGGTCGGCGTGGCCTCGTTCGAGAAGTTCGTCCAGCAGAATCCGAAGTCGCGCGAAGGACGCCTCGCGC TGGCGCAGCTCTATCTGGCCGACAACCGCCTCGAGGACGCACAGAAGCAGTTCGAGGCGATGCGCAGGAACGATCCGAAG GAACCGGCGCCGCTGATGGCGCTCGCGCTCGTCAAGATCCAGGAAAAGCATTACGACGACGCGCAGGCCGACCTGAAGCA GTACATCGAACTCGCCCAGAAGCGCCAGGGCGCCGATGTCGGCCAGGCCTACGTCTACCTTGCGCAGATCGCGATCGAGC AGAACGACGATGCGCAAGCCTCGCAATGGCTCGACAAGATCGACGCGTCGAGCCCGCATTACATCCCGGCCCAGGTCACG CGCGCGCAACTGCTCGCCAAGCAGGGCAAAACCGACGAGGCCCGCCAGGTGCTGGCCGGCATCCAGGTCTCCGATCCGCA CGACGCGGCCGTGATCGCGCGCACCGACGCGTCGCTGCTGTTCGCCGCCAAGCGCTACCGCGAGGCGGCCGACCGGCTGG CGCAGGCCGTCGAGCAGTTCCCCGACGATCCCGACCTGCGCTACGACTATGCGATGGCCTGCGAGAAGATCGGCCAGTAC ACGACCATGGAGCAGCAGCTGCGCCTGCTGATCAGCGCCCAGCCGGACAGCCCGCAGGCTTACAACGCGCTCGGCTACTC GCTCGCGGACCGCAACGAGCGCCTGCCCGAGGCGAACAAGCTGATCGAGCGCGCCAGCGCGCTCGCGCCCAAGGATGCGT TCATCATGGACAGCCTCGGCTGGGTCAAGTACCGGCTCGGCGACAACGCCGCCGCCGCCAAGATCCTGACGCAGGCCTAT GCGCTGCAGCCGAACGCCGAGATCGGCGCGCACCTCGGCGAAGTGCTCTGGAAGAGCGGCCAGCGGGACAAGGCCCGCGA AGTCTGGCGTGCTGCGCAAAAGCTCGAGCCCGACAACGACACGCTCGTCAGCACGCTCAAGCGCTTCGGGGTGAACGGGC TGTGA
Upstream 100 bases:
>100_bases GCAACTCTGGCATGGTTTTGTGGTCTGTGTGTGGCTGGTGCGATGGTGCGCGTATTGTAGCGAGCGCGTTACAATCGACC GAAACCTCGAACGGATTTCC
Downstream 100 bases:
>100_bases GCACCACGATTCGAACCGGCGCGCGGCTCGCGCGCCACGCTTGCGCCGTGCTCGCCGCGGGCGCCCTGCTGGCCGGCTGC GCGACGCGCCCCCAGCCGCC
Product: TPR domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 614; Mature: 613
Protein sequence:
>614_residues MTLPSTLSPKRSAARARRAFAFPVRRALGAALVAAWTFGAVAAHAQTPADAPAAGASDALAQSAFSPAFPEEKKDLPNVP LTAQIVYQVLAAEVALQRSQPAPAYQTYLALARDTKDPRMAQRATEIALAAQSPADALAAANLWRQFAPDSNRASQVDSA LLVLAGKPAEAEPLLARELARANGENRGDALLALQALISRGPNRVEGLTVLQDLLKNDLDRPEAQLAIARQQLATDDRAG AVASLKQALKLRPDYLPAALMLSQMGPDERAVGVASFEKFVQQNPKSREGRLALAQLYLADNRLEDAQKQFEAMRRNDPK EPAPLMALALVKIQEKHYDDAQADLKQYIELAQKRQGADVGQAYVYLAQIAIEQNDDAQASQWLDKIDASSPHYIPAQVT RAQLLAKQGKTDEARQVLAGIQVSDPHDAAVIARTDASLLFAAKRYREAADRLAQAVEQFPDDPDLRYDYAMACEKIGQY TTMEQQLRLLISAQPDSPQAYNALGYSLADRNERLPEANKLIERASALAPKDAFIMDSLGWVKYRLGDNAAAAKILTQAY ALQPNAEIGAHLGEVLWKSGQRDKAREVWRAAQKLEPDNDTLVSTLKRFGVNGL
Sequences:
>Translated_614_residues MTLPSTLSPKRSAARARRAFAFPVRRALGAALVAAWTFGAVAAHAQTPADAPAAGASDALAQSAFSPAFPEEKKDLPNVP LTAQIVYQVLAAEVALQRSQPAPAYQTYLALARDTKDPRMAQRATEIALAAQSPADALAAANLWRQFAPDSNRASQVDSA LLVLAGKPAEAEPLLARELARANGENRGDALLALQALISRGPNRVEGLTVLQDLLKNDLDRPEAQLAIARQQLATDDRAG AVASLKQALKLRPDYLPAALMLSQMGPDERAVGVASFEKFVQQNPKSREGRLALAQLYLADNRLEDAQKQFEAMRRNDPK EPAPLMALALVKIQEKHYDDAQADLKQYIELAQKRQGADVGQAYVYLAQIAIEQNDDAQASQWLDKIDASSPHYIPAQVT RAQLLAKQGKTDEARQVLAGIQVSDPHDAAVIARTDASLLFAAKRYREAADRLAQAVEQFPDDPDLRYDYAMACEKIGQY TTMEQQLRLLISAQPDSPQAYNALGYSLADRNERLPEANKLIERASALAPKDAFIMDSLGWVKYRLGDNAAAAKILTQAY ALQPNAEIGAHLGEVLWKSGQRDKAREVWRAAQKLEPDNDTLVSTLKRFGVNGL >Mature_613_residues TLPSTLSPKRSAARARRAFAFPVRRALGAALVAAWTFGAVAAHAQTPADAPAAGASDALAQSAFSPAFPEEKKDLPNVPL TAQIVYQVLAAEVALQRSQPAPAYQTYLALARDTKDPRMAQRATEIALAAQSPADALAAANLWRQFAPDSNRASQVDSAL LVLAGKPAEAEPLLARELARANGENRGDALLALQALISRGPNRVEGLTVLQDLLKNDLDRPEAQLAIARQQLATDDRAGA VASLKQALKLRPDYLPAALMLSQMGPDERAVGVASFEKFVQQNPKSREGRLALAQLYLADNRLEDAQKQFEAMRRNDPKE PAPLMALALVKIQEKHYDDAQADLKQYIELAQKRQGADVGQAYVYLAQIAIEQNDDAQASQWLDKIDASSPHYIPAQVTR AQLLAKQGKTDEARQVLAGIQVSDPHDAAVIARTDASLLFAAKRYREAADRLAQAVEQFPDDPDLRYDYAMACEKIGQYT TMEQQLRLLISAQPDSPQAYNALGYSLADRNERLPEANKLIERASALAPKDAFIMDSLGWVKYRLGDNAAAAKILTQAYA LQPNAEIGAHLGEVLWKSGQRDKAREVWRAAQKLEPDNDTLVSTLKRFGVNGL
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 5 TPR repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011717 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR013105 - InterPro: IPR019734 [H]
Pfam domain/function: PF07719 TPR_2; PF07721 TPR_4 [H]
EC number: NA
Molecular weight: Translated: 66840; Mature: 66709
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLPSTLSPKRSAARARRAFAFPVRRALGAALVAAWTFGAVAAHAQTPADAPAAGASDAL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH AQSAFSPAFPEEKKDLPNVPLTAQIVYQVLAAEVALQRSQPAPAYQTYLALARDTKDPRM HHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHH AQRATEIALAAQSPADALAAANLWRQFAPDSNRASQVDSALLVLAGKPAEAEPLLARELA HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHCEEEEEECCCCCCCHHHHHHHH RANGENRGDALLALQALISRGPNRVEGLTVLQDLLKNDLDRPEAQLAIARQQLATDDRAG HHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHH AVASLKQALKLRPDYLPAALMLSQMGPDERAVGVASFEKFVQQNPKSREGRLALAQLYLA HHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH DNRLEDAQKQFEAMRRNDPKEPAPLMALALVKIQEKHYDDAQADLKQYIELAQKRQGADV HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCH GQAYVYLAQIAIEQNDDAQASQWLDKIDASSPHYIPAQVTRAQLLAKQGKTDEARQVLAG HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHC IQVSDPHDAAVIARTDASLLFAAKRYREAADRLAQAVEQFPDDPDLRYDYAMACEKIGQY CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC TTMEQQLRLLISAQPDSPQAYNALGYSLADRNERLPEANKLIERASALAPKDAFIMDSLG CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCC WVKYRLGDNAAAAKILTQAYALQPNAEIGAHLGEVLWKSGQRDKAREVWRAAQKLEPDND CEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCH TLVSTLKRFGVNGL HHHHHHHHHCCCCC >Mature Secondary Structure TLPSTLSPKRSAARARRAFAFPVRRALGAALVAAWTFGAVAAHAQTPADAPAAGASDAL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH AQSAFSPAFPEEKKDLPNVPLTAQIVYQVLAAEVALQRSQPAPAYQTYLALARDTKDPRM HHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHH AQRATEIALAAQSPADALAAANLWRQFAPDSNRASQVDSALLVLAGKPAEAEPLLARELA HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHCEEEEEECCCCCCCHHHHHHHH RANGENRGDALLALQALISRGPNRVEGLTVLQDLLKNDLDRPEAQLAIARQQLATDDRAG HHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHH AVASLKQALKLRPDYLPAALMLSQMGPDERAVGVASFEKFVQQNPKSREGRLALAQLYLA HHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH DNRLEDAQKQFEAMRRNDPKEPAPLMALALVKIQEKHYDDAQADLKQYIELAQKRQGADV HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCH GQAYVYLAQIAIEQNDDAQASQWLDKIDASSPHYIPAQVTRAQLLAKQGKTDEARQVLAG HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHC IQVSDPHDAAVIARTDASLLFAAKRYREAADRLAQAVEQFPDDPDLRYDYAMACEKIGQY CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC TTMEQQLRLLISAQPDSPQAYNALGYSLADRNERLPEANKLIERASALAPKDAFIMDSLG CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCC WVKYRLGDNAAAAKILTQAYALQPNAEIGAHLGEVLWKSGQRDKAREVWRAAQKLEPDND CEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCH TLVSTLKRFGVNGL HHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7883699; 10984043 [H]