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The map label for this gene is kdsD [H]

Identifier: 238028652

GI number: 238028652

Start: 3545468

End: 3546451

Strand: Direct

Name: kdsD [H]

Synonym: bglu_1g31160

Alternate gene names: 238028652

Gene position: 3545468-3546451 (Clockwise)

Preceding gene: 238028646

Following gene: 238028653

Centisome position: 90.76

GC content: 69.0

Gene sequence:

>984_bases
ATGATAGCGAAAATCAATGATGATCGGGCGCTCGCGCTCGCTCGCGACGTGCTCGACATCGAGGCGGACGCCGTGCGCGC
CCTGCGCGAGCAACTCGACGGCGACTTCGTCGGCGCGGTCGGCCTGCTGCTGAACTGCCGCGGGCGCGTGGTCGTCTCCG
GAATCGGTAAATCCGGCCACATCGCGCGCAAGATCGCCGCCACGCTCGCCAGCACCGGCACGCCCGCATTCTTCGTGCAT
CCGGCCGAGGCCAGCCACGGCGACCTCGGCATGGTAACCGCCGACGATGTCTTTATCGCGATCTCGAACTCGGGCGAATC
GGCCGAACTGGTCTCGATCCTGCCGCTCATCAAGCGGCTCGGCGCCAAGCTGATCGCGATGACGGGCCGGCCGCAGTCGA
GCCTCGCCCAGTTGTCCGACGTCCATCTCAACGCCGCCGTCGAGAAGGAGGCCTGCTCGCTGAACCTCGCGCCGACCGCC
AGCACCACCGCCGCGCTCGCGCTCGGCGACGCGCTGGCCGTGGTGGTGCTCGACGCGCGCGGCTTCGGCCCCGACGATTT
CGCGCGCTCCCACCCGGGCGGCGCGCTCGGCCGGCGCCTGCTCACCTACGTGCGCGACGTGATGCGCACCGGCGACGAAA
TCCCCACCGTCACGCTCGCGGCCACGCTGTCCGACGCCCTGTTCCAGATCACCGCGAAGCGCATGGGCATGACCGCCGTG
GTCGACGAGCACAATCGCGTGGCCGGCATCTTCACCGACGGCGACCTGCGCCGCGTGCTCGAGCGCGACGGCGATTTCCG
CCGCCTGCCGATCGGCAACGTGATGACGCGCCACCCGCGCACCATCGCCCCCGACCATCTCGCCGTCGAGGCGGTGGAAC
TGATGGAGCGCTACCGGATCAACCAGATGCTGGTGACCGATCCGGACGGTACGCTGATCGGCGCGCTCAACATGCACGAC
CTGTTCTCCCAGAAGGTGATCTGA

Upstream 100 bases:

>100_bases
CCGCGCGCAGCGGCGGCTCGGTGGGCGAGGACAGGACTCCGTCGGGAGCGCAGTCCCGGCGCCCGGCGCGGCGAACAAAC
GCCTTTGCTATACTCCGCGC

Downstream 100 bases:

>100_bases
TGTCCGCTGCCCCCGCCACGGCCGCCGAACGCGCGAGCCGCGTGAAGCTGATGATTTTCGACGTCGACGGCGTGCTGACC
GACGGCGGCCTGCATTTCAC

Product: sugar isomerase, KpsF/GutQ family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MIAKINDDRALALARDVLDIEADAVRALREQLDGDFVGAVGLLLNCRGRVVVSGIGKSGHIARKIAATLASTGTPAFFVH
PAEASHGDLGMVTADDVFIAISNSGESAELVSILPLIKRLGAKLIAMTGRPQSSLAQLSDVHLNAAVEKEACSLNLAPTA
STTAALALGDALAVVVLDARGFGPDDFARSHPGGALGRRLLTYVRDVMRTGDEIPTVTLAATLSDALFQITAKRMGMTAV
VDEHNRVAGIFTDGDLRRVLERDGDFRRLPIGNVMTRHPRTIAPDHLAVEAVELMERYRINQMLVTDPDGTLIGALNMHD
LFSQKVI

Sequences:

>Translated_327_residues
MIAKINDDRALALARDVLDIEADAVRALREQLDGDFVGAVGLLLNCRGRVVVSGIGKSGHIARKIAATLASTGTPAFFVH
PAEASHGDLGMVTADDVFIAISNSGESAELVSILPLIKRLGAKLIAMTGRPQSSLAQLSDVHLNAAVEKEACSLNLAPTA
STTAALALGDALAVVVLDARGFGPDDFARSHPGGALGRRLLTYVRDVMRTGDEIPTVTLAATLSDALFQITAKRMGMTAV
VDEHNRVAGIFTDGDLRRVLERDGDFRRLPIGNVMTRHPRTIAPDHLAVEAVELMERYRINQMLVTDPDGTLIGALNMHD
LFSQKVI
>Mature_327_residues
MIAKINDDRALALARDVLDIEADAVRALREQLDGDFVGAVGLLLNCRGRVVVSGIGKSGHIARKIAATLASTGTPAFFVH
PAEASHGDLGMVTADDVFIAISNSGESAELVSILPLIKRLGAKLIAMTGRPQSSLAQLSDVHLNAAVEKEACSLNLAPTA
STTAALALGDALAVVVLDARGFGPDDFARSHPGGALGRRLLTYVRDVMRTGDEIPTVTLAATLSDALFQITAKRMGMTAV
VDEHNRVAGIFTDGDLRRVLERDGDFRRLPIGNVMTRHPRTIAPDHLAVEAVELMERYRINQMLVTDPDGTLIGALNMHD
LFSQKVI

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=313, Percent_Identity=55.2715654952077, Blast_Score=340, Evalue=8e-95,
Organism=Escherichia coli, GI87082151, Length=313, Percent_Identity=48.2428115015974, Blast_Score=286, Evalue=2e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 34825; Mature: 34825

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAKINDDRALALARDVLDIEADAVRALREQLDGDFVGAVGLLLNCRGRVVVSGIGKSGH
CCEEECCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCCH
IARKIAATLASTGTPAFFVHPAEASHGDLGMVTADDVFIAISNSGESAELVSILPLIKRL
HHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHC
GAKLIAMTGRPQSSLAQLSDVHLNAAVEKEACSLNLAPTASTTAALALGDALAVVVLDAR
CCEEEEECCCCHHHHHHHHHHHHHHHCCHHHHEEECCCCCCHHHHHHHCCEEEEEEEECC
GFGPDDFARSHPGGALGRRLLTYVRDVMRTGDEIPTVTLAATLSDALFQITAKRMGMTAV
CCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCCEEE
VDEHNRVAGIFTDGDLRRVLERDGDFRRLPIGNVMTRHPRTIAPDHLAVEAVELMERYRI
EECCCCEEEEEECHHHHHHHHCCCCEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCC
NQMLVTDPDGTLIGALNMHDLFSQKVI
CEEEEECCCCCEEEECCHHHHHHHCCC
>Mature Secondary Structure
MIAKINDDRALALARDVLDIEADAVRALREQLDGDFVGAVGLLLNCRGRVVVSGIGKSGH
CCEEECCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCCH
IARKIAATLASTGTPAFFVHPAEASHGDLGMVTADDVFIAISNSGESAELVSILPLIKRL
HHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHC
GAKLIAMTGRPQSSLAQLSDVHLNAAVEKEACSLNLAPTASTTAALALGDALAVVVLDAR
CCEEEEECCCCHHHHHHHHHHHHHHHCCHHHHEEECCCCCCHHHHHHHCCEEEEEEEECC
GFGPDDFARSHPGGALGRRLLTYVRDVMRTGDEIPTVTLAATLSDALFQITAKRMGMTAV
CCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCCEEE
VDEHNRVAGIFTDGDLRRVLERDGDFRRLPIGNVMTRHPRTIAPDHLAVEAVELMERYRI
EECCCCEEEEEECHHHHHHHHCCCCEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCC
NQMLVTDPDGTLIGALNMHDLFSQKVI
CEEEEECCCCCEEEECCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]