| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238028648
Identifier: 238028648
GI number: 238028648
Start: 3541063
End: 3541914
Strand: Reverse
Name: 238028648
Synonym: bglu_1g31120
Alternate gene names: NA
Gene position: 3541914-3541063 (Counterclockwise)
Preceding gene: 238028649
Following gene: 238028647
Centisome position: 90.67
GC content: 73.83
Gene sequence:
>852_bases ATGAGCTTTCCGTGCATCGCGGCCGCGCGCCGCTTCGACGCCGCCGCGCACCTGCCGTTCGTGATCGCGGGCGAGCGGTT CGGCTGGATCCGGCGCCGCGATCTCGGCGCGCTCGCGCGCTGGCCCGACGTATTCGAGATCGGCGCCGCGCAGGTCGCGC TGGCTGCCTCGCTCGAGACGCCCGACACCCGCAGCATGGCGCTCGCGAGCGTGACGGGCGCGCTCGCCGCCGACGGGCTG ATCCCGGGCTGGCGCAACGAGATCTACGCGGTCCGCAACGCGTTCGACGCGCCGCCCGCCGCCTACCTCGAACGCGCCGC TTCGCGCTTCTTCGGCACCCTGACCTACGCGGTTCACCTGAACGGCATCGTAGAATACGCGCCGGCCGAGCCGCTGCGGA TGTGGGTGGGCCGGCGCAGCGACACCAAGGCGACCGATCCGGGCATGCTCGACAACGTGGTGGCGGGTGGGATCGGCTGG GGCCTCGGCGTGGAGGCGACGCTCGCCAAGGAGTGCTGGGAGGAAGCCGGCATGCCGGCCGAGCTGGCCGCGCGCGCGAT CGCGGGGCGCACCGTCCACGTGCTGTGCTCGCTGCCGGAAGGCACCCAGGCCGAGCAGATCTTCGTCTACGACCTGCCGC TGCCGCGCGATTTCGTGCCGCGCAACCAGGATGGCGAAGTGGCCGAGCACCGGCTCGCGCGGGCCGACGAGGTCGTGCGC TGGCTCGCGGCCGGCGCGATGACGATGGACGCGAGCCTGGCCACGCTCGACAGCCTGTTGCGCCACCGCGTGCTCGCGCC GCAGGCGGCGGCCGGCATCGACGCGCTGTTCTCGCCGCCGCCGGCGGCCTGA
Upstream 100 bases:
>100_bases CTCAAGCGCCGGCCGCGCGCGGGCGTCTGGCTCGACCGGCTGGCCGGGGCGACCTTCATCGGGCTCGGCCTGCGCATCGC GTTCAAGGATTGAGGTTGCG
Downstream 100 bases:
>100_bases CGGCGCCACGAATTCAATCGATTGGAATGGAGGTGCGGTCATGTCGACCGACCATAGCTTTATCCTGAAACTGTCATGTC CCGACAAGCACGGCATCGTG
Product: thiamin pyrophosphokinase-like protein
Products: NA
Alternate protein names: Thiamin Pyrophosphokinase; NUDIX Domain-Containing Protein; Nucleoside Diphosphate; Thiamine Pyrophosphokinase; Nucleoside Diphosphate Hydrolase Protein; NTP Pyrophosphohydrolase; MutT/Nudix Family Protein; NUDIX Domain Family Protein; Nudix Family Protein; NTP Pyrophosphohydrolase Including Oxidative Damage Repair; Nudix Hydrolase; NUDIX Domain-Containing; Hydrolase NUDIX Family
Number of amino acids: Translated: 283; Mature: 282
Protein sequence:
>283_residues MSFPCIAAARRFDAAAHLPFVIAGERFGWIRRRDLGALARWPDVFEIGAAQVALAASLETPDTRSMALASVTGALAADGL IPGWRNEIYAVRNAFDAPPAAYLERAASRFFGTLTYAVHLNGIVEYAPAEPLRMWVGRRSDTKATDPGMLDNVVAGGIGW GLGVEATLAKECWEEAGMPAELAARAIAGRTVHVLCSLPEGTQAEQIFVYDLPLPRDFVPRNQDGEVAEHRLARADEVVR WLAAGAMTMDASLATLDSLLRHRVLAPQAAAGIDALFSPPPAA
Sequences:
>Translated_283_residues MSFPCIAAARRFDAAAHLPFVIAGERFGWIRRRDLGALARWPDVFEIGAAQVALAASLETPDTRSMALASVTGALAADGL IPGWRNEIYAVRNAFDAPPAAYLERAASRFFGTLTYAVHLNGIVEYAPAEPLRMWVGRRSDTKATDPGMLDNVVAGGIGW GLGVEATLAKECWEEAGMPAELAARAIAGRTVHVLCSLPEGTQAEQIFVYDLPLPRDFVPRNQDGEVAEHRLARADEVVR WLAAGAMTMDASLATLDSLLRHRVLAPQAAAGIDALFSPPPAA >Mature_282_residues SFPCIAAARRFDAAAHLPFVIAGERFGWIRRRDLGALARWPDVFEIGAAQVALAASLETPDTRSMALASVTGALAADGLI PGWRNEIYAVRNAFDAPPAAYLERAASRFFGTLTYAVHLNGIVEYAPAEPLRMWVGRRSDTKATDPGMLDNVVAGGIGWG LGVEATLAKECWEEAGMPAELAARAIAGRTVHVLCSLPEGTQAEQIFVYDLPLPRDFVPRNQDGEVAEHRLARADEVVRW LAAGAMTMDASLATLDSLLRHRVLAPQAAAGIDALFSPPPAA
Specific function: Unknown
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6322602, Length=243, Percent_Identity=29.2181069958848, Blast_Score=119, Evalue=7e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30313; Mature: 30182
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFPCIAAARRFDAAAHLPFVIAGERFGWIRRRDLGALARWPDVFEIGAAQVALAASLET CCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCHHHHCCCCHHHHCHHHHHHHHCCCC PDTRSMALASVTGALAADGLIPGWRNEIYAVRNAFDAPPAAYLERAASRFFGTLTYAVHL CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEE NGIVEYAPAEPLRMWVGRRSDTKATDPGMLDNVVAGGIGWGLGVEATLAKECWEEAGMPA CCEEECCCCCHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCH ELAARAIAGRTVHVLCSLPEGTQAEQIFVYDLPLPRDFVPRNQDGEVAEHRLARADEVVR HHHHHHHCCCEEEEEEECCCCCCCCEEEEEECCCCHHCCCCCCCCHHHHHHHHHHHHHHH WLAAGAMTMDASLATLDSLLRHRVLAPQAAAGIDALFSPPPAA HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHCCCCCCC >Mature Secondary Structure SFPCIAAARRFDAAAHLPFVIAGERFGWIRRRDLGALARWPDVFEIGAAQVALAASLET CCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCHHHHCCCCHHHHCHHHHHHHHCCCC PDTRSMALASVTGALAADGLIPGWRNEIYAVRNAFDAPPAAYLERAASRFFGTLTYAVHL CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEE NGIVEYAPAEPLRMWVGRRSDTKATDPGMLDNVVAGGIGWGLGVEATLAKECWEEAGMPA CCEEECCCCCHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCH ELAARAIAGRTVHVLCSLPEGTQAEQIFVYDLPLPRDFVPRNQDGEVAEHRLARADEVVR HHHHHHHCCCEEEEEEECCCCCCCCEEEEEECCCCHHCCCCCCCCHHHHHHHHHHHHHHH WLAAGAMTMDASLATLDSLLRHRVLAPQAAAGIDALFSPPPAA HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA