| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is purU [H]
Identifier: 238028647
GI number: 238028647
Start: 3540141
End: 3541022
Strand: Reverse
Name: purU [H]
Synonym: bglu_1g31110
Alternate gene names: 238028647
Gene position: 3541022-3540141 (Counterclockwise)
Preceding gene: 238028648
Following gene: 238028644
Centisome position: 90.64
GC content: 65.42
Gene sequence:
>882_bases ATGTCGACCGACCATAGCTTTATCCTGAAACTGTCATGTCCCGACAAGCACGGCATCGTGCATGCCGTGTCGGGTTTCCT GTTCGAGCGCGATACCAACATCGTCGATTCCGCGCAGTTCGGCGACAGCCGCACCGGCGAGTTCTTCATGCGCGTGCATT TCGACCAGGCCAGCGCGGCCGATGCCGGCACCGCGCTCGACACGCTGCGCGACGCGTTCGCGCCGCTCGCCGAACGCTTC GCGATGCGCTGGGAGCTGCACGACGCGTCGATCAAGCCGCGCGTGGTGATCCTCGTCTCGAAGATCGGCCACTGCCTGAA CGACCTGCTGTTCCGCTACCGCACCGGTCAGCTGCCGATCGAGATCGCGGCGATCGTCTCGAACCACAAGGATTTCTACC AGCTCGCCGCCAGCTACGACGTGCCGTTCCACCATTTCCCGCTGGTCGCGGGTGCCTCGGCGCAGGCGAAGGCCGCGCAG GAGGCGCGCGTGCTGGAGGTGATCGACGAGCATTCGGCCGACCTGGTGGTGCTCGCGCGCTACATGCAGATCCTGTCGCA GGACATGTGCCGGCGCCTGGCCGGCCGCGCGATCAATATCCACCATTCGTTCCTGCCGAGCTTCAAGGGCGCGAAGCCGT ATTACCAGGCGTTCGACCGCGGCGTGAAGCTGATCGGCGCGACCGCGCACTACGTGACGACCGACCTCGACGAAGGCCCG ATCATCGAGCAGGAAGTCGAGCGCGTCGACCATAGCATGACGCCGGAGCAGCTGACCGCGATCGGCCGCGACGTCGAATG CGTGACGCTCGCGCGCGCCGTGAAATGGCACGTCGAGCACCGCATCCTGCAGAACGGCACGAAGACGGTGGTGTTCCGCT GA
Upstream 100 bases:
>100_bases CTCGCGCCGCAGGCGGCGGCCGGCATCGACGCGCTGTTCTCGCCGCCGCCGGCGGCCTGACGGCGCCACGAATTCAATCG ATTGGAATGGAGGTGCGGTC
Downstream 100 bases:
>100_bases AGCCGGCAGCGGGCGAGGGCCGGCCGCGCGGCCGCGCCCGCGCCTCTGCTCAGATGAGGCGCAGCGTTGCCAGCTCGCGC TTCAGGTAGGCATAGAAGAT
Product: formyltetrahydrofolate deformylase
Products: NA
Alternate protein names: Formyl-FH(4) hydrolase [H]
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MSTDHSFILKLSCPDKHGIVHAVSGFLFERDTNIVDSAQFGDSRTGEFFMRVHFDQASAADAGTALDTLRDAFAPLAERF AMRWELHDASIKPRVVILVSKIGHCLNDLLFRYRTGQLPIEIAAIVSNHKDFYQLAASYDVPFHHFPLVAGASAQAKAAQ EARVLEVIDEHSADLVVLARYMQILSQDMCRRLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGP IIEQEVERVDHSMTPEQLTAIGRDVECVTLARAVKWHVEHRILQNGTKTVVFR
Sequences:
>Translated_293_residues MSTDHSFILKLSCPDKHGIVHAVSGFLFERDTNIVDSAQFGDSRTGEFFMRVHFDQASAADAGTALDTLRDAFAPLAERF AMRWELHDASIKPRVVILVSKIGHCLNDLLFRYRTGQLPIEIAAIVSNHKDFYQLAASYDVPFHHFPLVAGASAQAKAAQ EARVLEVIDEHSADLVVLARYMQILSQDMCRRLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGP IIEQEVERVDHSMTPEQLTAIGRDVECVTLARAVKWHVEHRILQNGTKTVVFR >Mature_292_residues STDHSFILKLSCPDKHGIVHAVSGFLFERDTNIVDSAQFGDSRTGEFFMRVHFDQASAADAGTALDTLRDAFAPLAERFA MRWELHDASIKPRVVILVSKIGHCLNDLLFRYRTGQLPIEIAAIVSNHKDFYQLAASYDVPFHHFPLVAGASAQAKAAQE ARVLEVIDEHSADLVVLARYMQILSQDMCRRLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPI IEQEVERVDHSMTPEQLTAIGRDVECVTLARAVKWHVEHRILQNGTKTVVFR
Specific function: Produces Formate From Formyl-Tetrahydrofolate. Provides The Major Source Of Formate For The Purt-Dependent Synthesis Of 5'-Phosphoribosyl-N-Formylglycinamide (Fgar) During Aerobic Growth. Has A Role In Regulating The One-Carbon Pool. [C]
COG id: COG0788
COG function: function code F; Formyltetrahydrofolate hydrolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ACT domain [H]
Homologues:
Organism=Homo sapiens, GI4503915, Length=182, Percent_Identity=32.4175824175824, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI209869995, Length=182, Percent_Identity=32.4175824175824, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI209869993, Length=182, Percent_Identity=32.4175824175824, Blast_Score=84, Evalue=2e-16, Organism=Escherichia coli, GI1787483, Length=285, Percent_Identity=39.6491228070175, Blast_Score=217, Evalue=9e-58, Organism=Escherichia coli, GI1788846, Length=189, Percent_Identity=29.1005291005291, Blast_Score=85, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17567511, Length=167, Percent_Identity=34.1317365269461, Blast_Score=89, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002376 - InterPro: IPR004810 [H]
Pfam domain/function: PF00551 Formyl_trans_N [H]
EC number: =3.5.1.10 [H]
Molecular weight: Translated: 32809; Mature: 32678
Theoretical pI: Translated: 6.84; Mature: 6.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTDHSFILKLSCPDKHGIVHAVSGFLFERDTNIVDSAQFGDSRTGEFFMRVHFDQASAA CCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC DAGTALDTLRDAFAPLAERFAMRWELHDASIKPRVVILVSKIGHCLNDLLFRYRTGQLPI CCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCE EIAAIVSNHKDFYQLAASYDVPFHHFPLVAGASAQAKAAQEARVLEVIDEHSADLVVLAR EEHHHHHCCHHHHHHHHHCCCCCHHCCEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHH YMQILSQDMCRRLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGP HHHHHHHHHHHHHHCCEEEEEHHHCCCCCCCCHHHHHHHCCCEEEECCHHEEEECCCCCC IIEQEVERVDHSMTPEQLTAIGRDVECVTLARAVKWHVEHRILQNGTKTVVFR CCHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC >Mature Secondary Structure STDHSFILKLSCPDKHGIVHAVSGFLFERDTNIVDSAQFGDSRTGEFFMRVHFDQASAA CCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC DAGTALDTLRDAFAPLAERFAMRWELHDASIKPRVVILVSKIGHCLNDLLFRYRTGQLPI CCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCE EIAAIVSNHKDFYQLAASYDVPFHHFPLVAGASAQAKAAQEARVLEVIDEHSADLVVLAR EEHHHHHCCHHHHHHHHHCCCCCHHCCEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHH YMQILSQDMCRRLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGP HHHHHHHHHHHHHHCCEEEEEHHHCCCCCCCCHHHHHHHCCCEEEECCHHEEEECCCCCC IIEQEVERVDHSMTPEQLTAIGRDVECVTLARAVKWHVEHRILQNGTKTVVFR CCHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7543100 [H]