Click here to switch to the map view.

The map label for this gene is ycaN [H]

Identifier: 238028641

GI number: 238028641

Start: 3531044

End: 3531958

Strand: Reverse

Name: ycaN [H]

Synonym: bglu_1g31050

Alternate gene names: 238028641

Gene position: 3531958-3531044 (Counterclockwise)

Preceding gene: 238028642

Following gene: 238028640

Centisome position: 90.41

GC content: 66.99

Gene sequence:

>915_bases
ATGGAATACATCGATAGCCTGCGTATCTTCTGTTCGGTCGTCGAGGCACGCGGCTTCACGCGCGCCGCGGACATGCTGGG
CCTGTCCACGCCAGTCGTGTCGCGCGCGATCGCCTCGCTCGAGAAGCGGCTCGGCGTGCGGCTGTTCCATCGCACCACGC
GCCAGATCTCGCTGACCGAGGCGGCCGAGCAGTTCTACGAGGGTTGCGTGCGCGTGATCGCCGATCTCGACGCGCTCGAG
GCAGGGGCCTCCACGCAGGCGCGCGAGCCCACCGGCGTGCTGCGCGTGATCTCGCACGCGACTGCCACCATGCACCGCCT
GATGGCGCTGATCGCGAGCTACAAGGAAAAGTACCCGAAGGTGAACATCGACGTGACGCTGGCCGAGCGCCCCGTCGATC
TGGTGGCCGAGGGCTACGACGTGGGCCTGCTGCTGCCGTTCATGCTGACTTCGGACACGGTCGTCACCCGGCTGGTGGAG
CTGATCCCGTTCGAACTCGCCGCCTCGCCCGACTACCTCGCGCGCCATCCGGCGCCGACCCATCCTGCCCAGCTCGCCGA
CCATCTGGTGGTGGCGTTCTCGACCTCGATCCGCAAGCCCGAGATGCGTTTCCGCGTGGACGACGAACTGCTGGTGGTGC
CGTTCCGCTACGAGATCGAATCGAACAACGCGCAGTTCAACCTCGACATGGTGCTGCGCGGCTTCGGAATCGGCATGCTG
CCGAGCTCGGGCATGCGCGAGCATCTCGCGGCGGGCCGGCTGGTGTCGGTGCTGCCCGGCTTTCCGCTCGTCGACATGGG
CGCCGAGATCCGCCTTGCCTACAGCTCGCGCACGCTGATGCCGGCTAAGGTGCGCAGCTTCATCGATCACACGATCGCAT
TCTTCGAGAGCGCCCCACCGCCGGGCACGCACTGA

Upstream 100 bases:

>100_bases
GTGCGGCGACTCGCCGGGCGCGACCGGCGACGGCGTCCTTGCCGCGCGGCCCCCTCGCGCGGTTCGTGTCGAGTCGCGCA
CGCTACCCGGAATCGTCGTC

Downstream 100 bases:

>100_bases
GCCGCCGCCGCCCGTCCGCCGGTCAGTTGCCGGATGAATCGGCGCGCGGCCGGCATCCGCGCCGGCGGATAATTGCCCCG
TCGATTCTTGCCGCGACAGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MEYIDSLRIFCSVVEARGFTRAADMLGLSTPVVSRAIASLEKRLGVRLFHRTTRQISLTEAAEQFYEGCVRVIADLDALE
AGASTQAREPTGVLRVISHATATMHRLMALIASYKEKYPKVNIDVTLAERPVDLVAEGYDVGLLLPFMLTSDTVVTRLVE
LIPFELAASPDYLARHPAPTHPAQLADHLVVAFSTSIRKPEMRFRVDDELLVVPFRYEIESNNAQFNLDMVLRGFGIGML
PSSGMREHLAAGRLVSVLPGFPLVDMGAEIRLAYSSRTLMPAKVRSFIDHTIAFFESAPPPGTH

Sequences:

>Translated_304_residues
MEYIDSLRIFCSVVEARGFTRAADMLGLSTPVVSRAIASLEKRLGVRLFHRTTRQISLTEAAEQFYEGCVRVIADLDALE
AGASTQAREPTGVLRVISHATATMHRLMALIASYKEKYPKVNIDVTLAERPVDLVAEGYDVGLLLPFMLTSDTVVTRLVE
LIPFELAASPDYLARHPAPTHPAQLADHLVVAFSTSIRKPEMRFRVDDELLVVPFRYEIESNNAQFNLDMVLRGFGIGML
PSSGMREHLAAGRLVSVLPGFPLVDMGAEIRLAYSSRTLMPAKVRSFIDHTIAFFESAPPPGTH
>Mature_304_residues
MEYIDSLRIFCSVVEARGFTRAADMLGLSTPVVSRAIASLEKRLGVRLFHRTTRQISLTEAAEQFYEGCVRVIADLDALE
AGASTQAREPTGVLRVISHATATMHRLMALIASYKEKYPKVNIDVTLAERPVDLVAEGYDVGLLLPFMLTSDTVVTRLVE
LIPFELAASPDYLARHPAPTHPAQLADHLVVAFSTSIRKPEMRFRVDDELLVVPFRYEIESNNAQFNLDMVLRGFGIGML
PSSGMREHLAAGRLVSVLPGFPLVDMGAEIRLAYSSRTLMPAKVRSFIDHTIAFFESAPPPGTH

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=282, Percent_Identity=31.9148936170213, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=31.2080536912752, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=29.2517006802721, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1787589, Length=273, Percent_Identity=29.3040293040293, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI87081978, Length=307, Percent_Identity=28.3387622149837, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789639, Length=308, Percent_Identity=25.6493506493506, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=22.9452054794521, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787879, Length=270, Percent_Identity=28.1481481481481, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789173, Length=141, Percent_Identity=30.4964539007092, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788748, Length=143, Percent_Identity=31.4685314685315, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI145693105, Length=279, Percent_Identity=25.4480286738351, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=25.4237288135593, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI157672245, Length=140, Percent_Identity=31.4285714285714, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33581; Mature: 33581

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYIDSLRIFCSVVEARGFTRAADMLGLSTPVVSRAIASLEKRLGVRLFHRTTRQISLTE
CCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAEQFYEGCVRVIADLDALEAGASTQAREPTGVLRVISHATATMHRLMALIASYKEKYPK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VNIDVTLAERPVDLVAEGYDVGLLLPFMLTSDTVVTRLVELIPFELAASPDYLARHPAPT
EEEEEEECCCCHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCC
HPAQLADHLVVAFSTSIRKPEMRFRVDDELLVVPFRYEIESNNAQFNLDMVLRGFGIGML
CHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEEEEEEECCCCEEEHHHHHHHCCCCCC
PSSGMREHLAAGRLVSVLPGFPLVDMGAEIRLAYSSRTLMPAKVRSFIDHTIAFFESAPP
CCCCHHHHHHHHHHHHHCCCCCEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
PGTH
CCCC
>Mature Secondary Structure
MEYIDSLRIFCSVVEARGFTRAADMLGLSTPVVSRAIASLEKRLGVRLFHRTTRQISLTE
CCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAEQFYEGCVRVIADLDALEAGASTQAREPTGVLRVISHATATMHRLMALIASYKEKYPK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VNIDVTLAERPVDLVAEGYDVGLLLPFMLTSDTVVTRLVELIPFELAASPDYLARHPAPT
EEEEEEECCCCHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCC
HPAQLADHLVVAFSTSIRKPEMRFRVDDELLVVPFRYEIESNNAQFNLDMVLRGFGIGML
CHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEEEEEEECCCCEEEHHHHHHHCCCCCC
PSSGMREHLAAGRLVSVLPGFPLVDMGAEIRLAYSSRTLMPAKVRSFIDHTIAFFESAPP
CCCCHHHHHHHHHHHHHCCCCCEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
PGTH
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]