| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is mdtP [H]
Identifier: 238028639
GI number: 238028639
Start: 3528551
End: 3530071
Strand: Reverse
Name: mdtP [H]
Synonym: bglu_1g31030
Alternate gene names: 238028639
Gene position: 3530071-3528551 (Counterclockwise)
Preceding gene: 238028640
Following gene: 238028638
Centisome position: 90.36
GC content: 71.53
Gene sequence:
>1521_bases ATGAGGCCGCCGCTGATCCCGATGCCGCTGCGCGCGATCCGCGCCGGCGCGGCGGCGGCCGTCGCCGCGCTGGCGCTGGC CGGCTGCGCGAACTACGCGGGCATCCACAGCGACCGGCGCATCACGCCGGCCGCGCAACTGGCAAGCACCGAAAGCCTGC CGGCCGAGGGCGGCCGGTGGCCCACGCTCGACTGGGCCGACCAGTTCGGCGATCCCCAACTGCCGAAGCTGATCGGCGAA GCGCTCGACGGCAACCCGACCATCGCGCAGGCGCAGGCGCGGCTCGCGAAGGCGTCCTCGTACATCGAAGCGTCGCGCGC GCCGCTGCTGCCGAAGGTCGAGGGCAGCTACTCGTGGACTCGCGAGCTGTATTCGGGCAACGGGCTCGTTCCGCCGCCCT ACGGCGGCAACTGGTACAGCGAGAACAACGCGTTGGCGAGCGCCTCGTGGGAGCTCGATCTCTGGGGCAAGAACCGCGAG AAGCTGCGTTCGGCGGTGTCGCAGCGCAAGGCCGCGCAGGCCGAGTTCGAGCAGGCGCGCGTGACGCTCGCGACCTCGGT GGCACGTACCTACAACCAGCTCGCCCAGCTCTACGCGCTGCGTGAGATCGCGCAGCGCGAGATCCGCAACCGCGAGACGG TCGGCAAGATCACCGAAGGCCGCGTCGGCGCCGGGCTCGACACCAATGTCGAGCGGCAGACCGCGCGCGGCAACGTGGCC ACCAGCGAATCGGCGCTGTCCGACCTCGACGGCCAGATCACCACGGTGCGCTACCAGCTCGCGGCGCTGCTCGGCAAGGG CCCCGATCGCGGCCTGACGATCGCCGTGCCGGTGCTGCACCCGGGCGGCGCGATCGCGCTGCCCGACAATATCCCGGCGA ATCTGGTGTCGCGCCGGCCCGATCTGGTCGCCGCGCGCTGGCAGGTCGAGGGCGCGATGCACGACGTGAAGGAGGCCAAG GCCGAGTTCTTCCCCGACGTGAACCTCGCGGCCGGCTTTGGCTTCGATGCGTTCGGCTGGGGCAACTTCCTGAAGTTCGC GAGCCGCCAGGCGCAGTTCGGTCCGGCCGTGAACCTGCCGATCTTCGATGCCGGGGCGTTGCGCGCGCAACTGAAGGGGC GCTACGCCGACTTCGACCTGAGCGTGGCGAACTACAACCAGACGCTGATCGGCGCGCTCAACGACGTGGCCACGCAGGTG GCCGCGATCCGTGCGATCGACCGGCAGATGGGCGACGCGCAGCGCGCGCTCGACGCCTCGACGCGCGCCTACGAGCTTGC CGTGGTCCGCTACAAGGCCGGCCTCTCGCCGCAGCTTCAGGTGCTGAGCGCCGACATCCTGCGGCTCGATTCGGAGCAGG CCGTGACCAATCTCGTGATGCGCCGCCGCGATCTGCAGATCGGCCTGATCAAGGCGCTCGGCGGCGGCTTCGATGCGGCG GGCTCGCCGCTCGCGGCGCCCGCCGCTTCGGACGCCGCCGCGCCGCCGGCGGCACCGGCATCGAACGCCACCCCGGGCTG A
Upstream 100 bases:
>100_bases GGCAATCGGATTGCCTTTTGATAGTTGCCTAGTCCATTAATGCAGGGAATCGTTTTCGTATGAATACCGTCAGGCACGAT GAACGCCGCGGAGCCGCGCG
Downstream 100 bases:
>100_bases GCCGCCCGCCACCTTCTCGAATCGACAGACCCAGTGCGCCGCGCTCCGAACGCGGCGGACGAAGACGGAGAACCTCGCGA TGAGCGACCCCCAGCAGCAA
Product: NodT family RND efflux system outer membrane lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 506; Mature: 506
Protein sequence:
>506_residues MRPPLIPMPLRAIRAGAAAAVAALALAGCANYAGIHSDRRITPAAQLASTESLPAEGGRWPTLDWADQFGDPQLPKLIGE ALDGNPTIAQAQARLAKASSYIEASRAPLLPKVEGSYSWTRELYSGNGLVPPPYGGNWYSENNALASASWELDLWGKNRE KLRSAVSQRKAAQAEFEQARVTLATSVARTYNQLAQLYALREIAQREIRNRETVGKITEGRVGAGLDTNVERQTARGNVA TSESALSDLDGQITTVRYQLAALLGKGPDRGLTIAVPVLHPGGAIALPDNIPANLVSRRPDLVAARWQVEGAMHDVKEAK AEFFPDVNLAAGFGFDAFGWGNFLKFASRQAQFGPAVNLPIFDAGALRAQLKGRYADFDLSVANYNQTLIGALNDVATQV AAIRAIDRQMGDAQRALDASTRAYELAVVRYKAGLSPQLQVLSADILRLDSEQAVTNLVMRRRDLQIGLIKALGGGFDAA GSPLAAPAASDAAAPPAAPASNATPG
Sequences:
>Translated_506_residues MRPPLIPMPLRAIRAGAAAAVAALALAGCANYAGIHSDRRITPAAQLASTESLPAEGGRWPTLDWADQFGDPQLPKLIGE ALDGNPTIAQAQARLAKASSYIEASRAPLLPKVEGSYSWTRELYSGNGLVPPPYGGNWYSENNALASASWELDLWGKNRE KLRSAVSQRKAAQAEFEQARVTLATSVARTYNQLAQLYALREIAQREIRNRETVGKITEGRVGAGLDTNVERQTARGNVA TSESALSDLDGQITTVRYQLAALLGKGPDRGLTIAVPVLHPGGAIALPDNIPANLVSRRPDLVAARWQVEGAMHDVKEAK AEFFPDVNLAAGFGFDAFGWGNFLKFASRQAQFGPAVNLPIFDAGALRAQLKGRYADFDLSVANYNQTLIGALNDVATQV AAIRAIDRQMGDAQRALDASTRAYELAVVRYKAGLSPQLQVLSADILRLDSEQAVTNLVMRRRDLQIGLIKALGGGFDAA GSPLAAPAASDAAAPPAAPASNATPG >Mature_506_residues MRPPLIPMPLRAIRAGAAAAVAALALAGCANYAGIHSDRRITPAAQLASTESLPAEGGRWPTLDWADQFGDPQLPKLIGE ALDGNPTIAQAQARLAKASSYIEASRAPLLPKVEGSYSWTRELYSGNGLVPPPYGGNWYSENNALASASWELDLWGKNRE KLRSAVSQRKAAQAEFEQARVTLATSVARTYNQLAQLYALREIAQREIRNRETVGKITEGRVGAGLDTNVERQTARGNVA TSESALSDLDGQITTVRYQLAALLGKGPDRGLTIAVPVLHPGGAIALPDNIPANLVSRRPDLVAARWQVEGAMHDVKEAK AEFFPDVNLAAGFGFDAFGWGNFLKFASRQAQFGPAVNLPIFDAGALRAQLKGRYADFDLSVANYNQTLIGALNDVATQV AAIRAIDRQMGDAQRALDASTRAYELAVVRYKAGLSPQLQVLSADILRLDSEQAVTNLVMRRRDLQIGLIKALGGGFDAA GSPLAAPAASDAAAPPAAPASNATPG
Specific function: Could be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride [H]
COG id: COG1538
COG function: function code MU; Outer membrane protein
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]
Homologues:
Organism=Escherichia coli, GI2367348, Length=462, Percent_Identity=29.6536796536797, Blast_Score=190, Evalue=2e-49, Organism=Escherichia coli, GI1786785, Length=462, Percent_Identity=25.974025974026, Blast_Score=122, Evalue=5e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003423 - InterPro: IPR010131 [H]
Pfam domain/function: PF02321 OEP [H]
EC number: NA
Molecular weight: Translated: 53718; Mature: 53718
Theoretical pI: Translated: 9.09; Mature: 9.09
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPPLIPMPLRAIRAGAAAAVAALALAGCANYAGIHSDRRITPAAQLASTESLPAEGGRW CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCC PTLDWADQFGDPQLPKLIGEALDGNPTIAQAQARLAKASSYIEASRAPLLPKVEGSYSWT CCCCHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH RELYSGNGLVPPPYGGNWYSENNALASASWELDLWGKNREKLRSAVSQRKAAQAEFEQAR HHHHCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH VTLATSVARTYNQLAQLYALREIAQREIRNRETVGKITEGRVGAGLDTNVERQTARGNVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCC TSESALSDLDGQITTVRYQLAALLGKGPDRGLTIAVPVLHPGGAIALPDNIPANLVSRRP CCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEECCCCCCHHHHHCCC DLVAARWQVEGAMHDVKEAKAEFFPDVNLAAGFGFDAFGWGNFLKFASRQAQFGPAVNLP CEEEEHEEHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCC IFDAGALRAQLKGRYADFDLSVANYNQTLIGALNDVATQVAAIRAIDRQMGDAQRALDAS EECCHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TRAYELAVVRYKAGLSPQLQVLSADILRLDSEQAVTNLVMRRRDLQIGLIKALGGGFDAA CCCEEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEHHHHHCCCCCCC GSPLAAPAASDAAAPPAAPASNATPG CCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRPPLIPMPLRAIRAGAAAAVAALALAGCANYAGIHSDRRITPAAQLASTESLPAEGGRW CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCC PTLDWADQFGDPQLPKLIGEALDGNPTIAQAQARLAKASSYIEASRAPLLPKVEGSYSWT CCCCHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH RELYSGNGLVPPPYGGNWYSENNALASASWELDLWGKNREKLRSAVSQRKAAQAEFEQAR HHHHCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH VTLATSVARTYNQLAQLYALREIAQREIRNRETVGKITEGRVGAGLDTNVERQTARGNVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCC TSESALSDLDGQITTVRYQLAALLGKGPDRGLTIAVPVLHPGGAIALPDNIPANLVSRRP CCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEECCCCCCHHHHHCCC DLVAARWQVEGAMHDVKEAKAEFFPDVNLAAGFGFDAFGWGNFLKFASRQAQFGPAVNLP CEEEEHEEHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCC IFDAGALRAQLKGRYADFDLSVANYNQTLIGALNDVATQVAAIRAIDRQMGDAQRALDAS EECCHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TRAYELAVVRYKAGLSPQLQVLSADILRLDSEQAVTNLVMRRRDLQIGLIKALGGGFDAA CCCEEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEHHHHHCCCCCCC GSPLAAPAASDAAAPPAAPASNATPG CCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]