| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yqcF [H]
Identifier: 238028566
GI number: 238028566
Start: 3443105
End: 3443680
Strand: Reverse
Name: yqcF [H]
Synonym: bglu_1g30300
Alternate gene names: 238028566
Gene position: 3443680-3443105 (Counterclockwise)
Preceding gene: 238028567
Following gene: 238028564
Centisome position: 88.15
GC content: 69.44
Gene sequence:
>576_bases ATGGTTGCGCAGGGCAATGAAGCAGCAAGGCAGGCGGTCGCGCGCCATGTCATGACGGTGTTCGACGGCATGCCGAAAGC GCAGCCGTTCTCGCGCGACGCGCGCGAGCTGGCGGTGCTGTCGGTGGCCGATGCGCCGGACGAGGACGTGGTGTCGTACA GCACCGCCGGCCTGTGCGAGTTCGCGCTCGACACGGGCGGGTTCGACACGCGCATCGAGCTGTGCGGCGCGATGCCGGAC GACGTGGCGCACTGGCCCGACATCCTCGCGGCCGCCGCGTTCGAGCTGGCCGCGGCGGCCTCGCCAGTGCGGCCCGGCGT GGTGGTGCGCGAGGTGGTGGCGCGTTGCTATCCCAAGACCACGGTGCCGCATCTCTATCTGTCGATTCCGTTCATCTGGA ACGACGGCGAGTTTCCCGAGTGCCGGCTGGACGGCATGCGCATCAACTGGCTGCAGTGCTTCCCGGTCTCGGACGAGGAG GCACGGCTCGCGAGCGAGCTCGGCGCCGACCGCTTCGAAAGCCGGCTCGACGAGGCCGGCATCGACACCTACGACCTGCG CCGCAAGTCGCTCTGA
Upstream 100 bases:
>100_bases GGCCGGCATCGGGCACGGATCGTGCCGCGTCGGCCGCGGCCGGTTCGGTGCGCCGTGCCGGATGGTCCCGGCCCGCCGGA CATGAAGGGGAGAACACGAG
Downstream 100 bases:
>100_bases AGCCGAACGGCGCCGGCGTCGATCACCACTCGGCGACGCTGCCGTCCGCGTGACGCCACACCGGGTTGCGCCAGCGATGG CCGACCTTCGCCATCTCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 191; Mature: 191
Protein sequence:
>191_residues MVAQGNEAARQAVARHVMTVFDGMPKAQPFSRDARELAVLSVADAPDEDVVSYSTAGLCEFALDTGGFDTRIELCGAMPD DVAHWPDILAAAAFELAAAASPVRPGVVVREVVARCYPKTTVPHLYLSIPFIWNDGEFPECRLDGMRINWLQCFPVSDEE ARLASELGADRFESRLDEAGIDTYDLRRKSL
Sequences:
>Translated_191_residues MVAQGNEAARQAVARHVMTVFDGMPKAQPFSRDARELAVLSVADAPDEDVVSYSTAGLCEFALDTGGFDTRIELCGAMPD DVAHWPDILAAAAFELAAAASPVRPGVVVREVVARCYPKTTVPHLYLSIPFIWNDGEFPECRLDGMRINWLQCFPVSDEE ARLASELGADRFESRLDEAGIDTYDLRRKSL >Mature_191_residues MVAQGNEAARQAVARHVMTVFDGMPKAQPFSRDARELAVLSVADAPDEDVVSYSTAGLCEFALDTGGFDTRIELCGAMPD DVAHWPDILAAAAFELAAAASPVRPGVVVREVVARCYPKTTVPHLYLSIPFIWNDGEFPECRLDGMRINWLQCFPVSDEE ARLASELGADRFESRLDEAGIDTYDLRRKSL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020941 [H]
Pfam domain/function: PF05076 SUFU [H]
EC number: NA
Molecular weight: Translated: 20949; Mature: 20949
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVAQGNEAARQAVARHVMTVFDGMPKAQPFSRDARELAVLSVADAPDEDVVSYSTAGLCE CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEEEEEECCCCCHHHHHHCCCCHHH FALDTGGFDTRIELCGAMPDDVAHWPDILAAAAFELAAAASPVRPGVVVREVVARCYPKT HHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC TVPHLYLSIPFIWNDGEFPECRLDGMRINWLQCFPVSDEEARLASELGADRFESRLDEAG CCCEEEEEEEEEECCCCCCCEEECCEEEEEEEEECCCCHHHHHHHHHCHHHHHHHHHHCC IDTYDLRRKSL CCHHHHHHCCC >Mature Secondary Structure MVAQGNEAARQAVARHVMTVFDGMPKAQPFSRDARELAVLSVADAPDEDVVSYSTAGLCE CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEEEEEECCCCCHHHHHHCCCCHHH FALDTGGFDTRIELCGAMPDDVAHWPDILAAAAFELAAAASPVRPGVVVREVVARCYPKT HHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC TVPHLYLSIPFIWNDGEFPECRLDGMRINWLQCFPVSDEEARLASELGADRFESRLDEAG CCCEEEEEEEEEECCCCCCCEEECCEEEEEEEEECCCCHHHHHHHHHCHHHHHHHHHHCC IDTYDLRRKSL CCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7704261; 8969508; 9384377; 7489895 [H]