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The map label for this gene is dgoD [H]

Identifier: 238028565

GI number: 238028565

Start: 3441934

End: 3443082

Strand: Direct

Name: dgoD [H]

Synonym: bglu_1g30290

Alternate gene names: 238028565

Gene position: 3441934-3443082 (Clockwise)

Preceding gene: 238028563

Following gene: 238028568

Centisome position: 88.11

GC content: 68.06

Gene sequence:

>1149_bases
ATGAAGATCACCCGCCTCGAAACCTTCGTCGTCCCGCCACGCTGGCTGTTCCTCAAGATCGAGACCGACGAGGGCATCGT
CGGCTGGGGCGAGCCGATCGTCGAGGGGCGCGCGCACACGGTGGAGGCCGCCGTGCAGGAGCTGGCCGACTACCTGGTGG
GGCGCGACCCGCTGCTGATCGAGGACCACTGGCAGGTGATGTACCGCGCCGGGTTCTATCGCGGCGGCCCGGTCACGATG
AGCGCGATCGCGGGCGTCGACCAGGCGCTCTGGGACATCAAGGGCAAGTTCCACGGCGCGCCCGTCCACGCGCTGCTCGG
CGGCCAGGTGCGCGATCGCATCAAGGTCTATTCGTGGATCGGCGGCGACCGCCCGAGCGACGTCGCCAACAACGCGCGCG
CGGTGGTCGAGCGCGGCTTCAAGGCCGTCAAGATGAACGGCTCCGAGGAACTGCAAATCGTCGACACCTACGACAAGGTC
GAGAAGGTGATCGCGAACGTGGCCGCGGTGCGCGAGGCGGTGGGCCCGCACGTGGGGATCGGCGTCGATTTCCACGGCCG
CGTCCACAAGCCGATGGCCAAGGTGCTCGCCAAGGAACTCGACCCGTACCGGCTGATGTTCATCGAGGAGCCGGTGCTCT
CGGAGAACGCCGAGGCGCTGCGCGACATCGTCAACCAGACCGACACGCCGATCGCGCTCGGCGAGCGGCTCTACTCGCGC
TGGGACTTCAAGCACGTCCTGGCGGGCGGCTACGTCGACATCATCCAGCCCGACGCCTCGCACGCCGGCGGCATCACCGA
GTGCCGCAAGATCGCCTCGCTGGCCGAGGCCTACGACGTCGCGCTCGCGCTGCACTGCCCGCTCGGGCCGATCGCGCTGG
CCGCGTGCCTGCAGCTCGACGCGGTCAGCTACAACGCGTTCATCCAGGAGCAGAGCCTCGGCATCCACTACAACCAGGGC
AACGATCTGCTCGACTACATCCGCAATCCGGAAGTGTTCCGCTACGAGGACGGCTTCGTGACGATCCCGCAGGGTCCGGG
GCTCGGCATCGACGTCAACGAGGAAAAGGTGCGCGAGATGGCGAAGGTCGGCCATCGCTGGCGCAACCCGGTGTGGCGTC
ACGCGGACGGCAGCGTCGCCGAGTGGTGA

Upstream 100 bases:

>100_bases
CTATCTGCGCAAAAGTGCTATTAATACTACTTTTTAGCGCTTTCGTGTAGGATGCCATCATCGACGCCGCCTGACGCGTC
CCCCTCACGGAGACACCGCC

Downstream 100 bases:

>100_bases
TCGACGCCGGCGCCGTTCGGCTTCAGAGCGACTTGCGGCGCAGGTCGTAGGTGTCGATGCCGGCCTCGTCGAGCCGGCTT
TCGAAGCGGTCGGCGCCGAG

Product: galactonate dehydratase

Products: NA

Alternate protein names: GalD [H]

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MKITRLETFVVPPRWLFLKIETDEGIVGWGEPIVEGRAHTVEAAVQELADYLVGRDPLLIEDHWQVMYRAGFYRGGPVTM
SAIAGVDQALWDIKGKFHGAPVHALLGGQVRDRIKVYSWIGGDRPSDVANNARAVVERGFKAVKMNGSEELQIVDTYDKV
EKVIANVAAVREAVGPHVGIGVDFHGRVHKPMAKVLAKELDPYRLMFIEEPVLSENAEALRDIVNQTDTPIALGERLYSR
WDFKHVLAGGYVDIIQPDASHAGGITECRKIASLAEAYDVALALHCPLGPIALAACLQLDAVSYNAFIQEQSLGIHYNQG
NDLLDYIRNPEVFRYEDGFVTIPQGPGLGIDVNEEKVREMAKVGHRWRNPVWRHADGSVAEW

Sequences:

>Translated_382_residues
MKITRLETFVVPPRWLFLKIETDEGIVGWGEPIVEGRAHTVEAAVQELADYLVGRDPLLIEDHWQVMYRAGFYRGGPVTM
SAIAGVDQALWDIKGKFHGAPVHALLGGQVRDRIKVYSWIGGDRPSDVANNARAVVERGFKAVKMNGSEELQIVDTYDKV
EKVIANVAAVREAVGPHVGIGVDFHGRVHKPMAKVLAKELDPYRLMFIEEPVLSENAEALRDIVNQTDTPIALGERLYSR
WDFKHVLAGGYVDIIQPDASHAGGITECRKIASLAEAYDVALALHCPLGPIALAACLQLDAVSYNAFIQEQSLGIHYNQG
NDLLDYIRNPEVFRYEDGFVTIPQGPGLGIDVNEEKVREMAKVGHRWRNPVWRHADGSVAEW
>Mature_382_residues
MKITRLETFVVPPRWLFLKIETDEGIVGWGEPIVEGRAHTVEAAVQELADYLVGRDPLLIEDHWQVMYRAGFYRGGPVTM
SAIAGVDQALWDIKGKFHGAPVHALLGGQVRDRIKVYSWIGGDRPSDVANNARAVVERGFKAVKMNGSEELQIVDTYDKV
EKVIANVAAVREAVGPHVGIGVDFHGRVHKPMAKVLAKELDPYRLMFIEEPVLSENAEALRDIVNQTDTPIALGERLYSR
WDFKHVLAGGYVDIIQPDASHAGGITECRKIASLAEAYDVALALHCPLGPIALAACLQLDAVSYNAFIQEQSLGIHYNQG
NDLLDYIRNPEVFRYEDGFVTIPQGPGLGIDVNEEKVREMAKVGHRWRNPVWRHADGSVAEW

Specific function: Catalyzes the dehydration of D-galactonate to 2-keto-3- deoxy-D-galactonate [H]

COG id: COG4948

COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family. GalD subfamily [H]

Homologues:

Organism=Escherichia coli, GI48994953, Length=382, Percent_Identity=62.565445026178, Blast_Score=508, Evalue=1e-145,
Organism=Escherichia coli, GI1787864, Length=414, Percent_Identity=32.8502415458937, Blast_Score=195, Evalue=5e-51,
Organism=Escherichia coli, GI226510960, Length=268, Percent_Identity=30.9701492537313, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018110
- InterPro:   IPR013342
- InterPro:   IPR013341
- InterPro:   IPR001354 [H]

Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]

EC number: =4.2.1.6 [H]

Molecular weight: Translated: 42416; Mature: 42416

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS00908 MR_MLE_1 ; PS00909 MR_MLE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITRLETFVVPPRWLFLKIETDEGIVGWGEPIVEGRAHTVEAAVQELADYLVGRDPLLI
CCCEEEEEEEECCEEEEEEEECCCCCEECCCHHHCCCHHHHHHHHHHHHHHHHCCCCEEE
EDHWQVMYRAGFYRGGPVTMSAIAGVDQALWDIKGKFHGAPVHALLGGQVRDRIKVYSWI
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHEEHCC
GGDRPSDVANNARAVVERGFKAVKMNGSEELQIVDTYDKVEKVIANVAAVREAVGPHVGI
CCCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEE
GVDFHGRVHKPMAKVLAKELDPYRLMFIEEPVLSENAEALRDIVNQTDTPIALGERLYSR
EECCCCCHHHHHHHHHHHHCCCEEEEEEECCHHCCCHHHHHHHHCCCCCCHHHHHHHHHH
WDFKHVLAGGYVDIIQPDASHAGGITECRKIASLAEAYDVALALHCPLGPIALAACLQLD
CCHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHH
AVSYNAFIQEQSLGIHYNQGNDLLDYIRNPEVFRYEDGFVTIPQGPGLGIDVNEEKVREM
HHHHHHEEEECCCCEEECCCCHHHHHHCCCCEEEECCCEEECCCCCCCCCCCCHHHHHHH
AKVGHRWRNPVWRHADGSVAEW
HHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKITRLETFVVPPRWLFLKIETDEGIVGWGEPIVEGRAHTVEAAVQELADYLVGRDPLLI
CCCEEEEEEEECCEEEEEEEECCCCCEECCCHHHCCCHHHHHHHHHHHHHHHHCCCCEEE
EDHWQVMYRAGFYRGGPVTMSAIAGVDQALWDIKGKFHGAPVHALLGGQVRDRIKVYSWI
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHEEHCC
GGDRPSDVANNARAVVERGFKAVKMNGSEELQIVDTYDKVEKVIANVAAVREAVGPHVGI
CCCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEE
GVDFHGRVHKPMAKVLAKELDPYRLMFIEEPVLSENAEALRDIVNQTDTPIALGERLYSR
EECCCCCHHHHHHHHHHHHCCCEEEEEEECCHHCCCHHHHHHHHCCCCCCHHHHHHHHHH
WDFKHVLAGGYVDIIQPDASHAGGITECRKIASLAEAYDVALALHCPLGPIALAACLQLD
CCHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHH
AVSYNAFIQEQSLGIHYNQGNDLLDYIRNPEVFRYEDGFVTIPQGPGLGIDVNEEKVREM
HHHHHHEEEECCCCEEECCCCHHHHHHCCCCEEEECCCEEECCCCCCCCCCCCHHHHHHH
AKVGHRWRNPVWRHADGSVAEW
HHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA