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The map label for this gene is tctD [H]

Identifier: 238028549

GI number: 238028549

Start: 3418561

End: 3419238

Strand: Reverse

Name: tctD [H]

Synonym: bglu_1g30130

Alternate gene names: 238028549

Gene position: 3419238-3418561 (Counterclockwise)

Preceding gene: 238028550

Following gene: 238028548

Centisome position: 87.53

GC content: 70.8

Gene sequence:

>678_bases
GTGAGGCTGCTGCTCGTCGAGGACAATGAGGAGCTGGCGCACTGGCTGGCGATGACGCTGACGCACGACGGCTTCATGCT
CGATCGCGTCGGCGCCGGCGAGGCCGCCGAGGATGCGCTGCGGGCGTCGACCTACGACGTGGTGCTGCTCGACCTGAACC
TGCCCGGGGTCTCGGGCAAGACCGTGCTGCGCCGCATGCGCGAGCGCGGCGACGCCACCCCGGTGCTGATCCTGACCGCC
ACCGGCGCGGTGGACGAGAAGGTGGTCTGCCTCGGCGCCGGCGCCGACGACTACATCGTCAAGCCGTTCGACGCGCGCGA
GCTGGTGGCGCGCATCAAGGTGCTGGCGCGCCGCCAGGCGCCGTCGCGCTCGAACCGGGTCCGCTGCGGCAACCTCGTCT
ACGACATGGACCGCCTGCAGTTCGCGATCGACGATGCGCCGCTCGTGCTCACGCCGCGCGAACACGCCGTGCTCGAGGCG
CTGATGCTGCGCGCCAGGAAGACGGTGTCGAAGGCCACGCTGGCCGAATCGGTCAGCGCCGCCGACGCGCCCACCAGCGA
GGACGCGATCGAGATCTACGTGTCGCGGCTGCGCCGCAAGCTCGAGGCGAGCAGCGCCACCATCATCACGCTGCGCGGGC
TCGGCTATCTGCTGGAAGACGGCGCCGCCGATGAATAG

Upstream 100 bases:

>100_bases
CCGCCGTGTGCGGCATGGTGGCGACGCTGCTGCTGTACCGGACGAAATCCGCCCGCGAACAGTATCGGCTCGCCTGATTC
GAATCGTAGCGGGAGGGCGC

Downstream 100 bases:

>100_bases
CCTGCGCGTGCGGCTGCTGATCTGGCTGGCGCTGCCGATGACGGTGTTCATCGTCGCGGCCGGCCTGATCACGCGCAGCA
ACGCGTGGCGCACCGCCAAC

Product: winged helix family two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MRLLLVEDNEELAHWLAMTLTHDGFMLDRVGAGEAAEDALRASTYDVVLLDLNLPGVSGKTVLRRMRERGDATPVLILTA
TGAVDEKVVCLGAGADDYIVKPFDARELVARIKVLARRQAPSRSNRVRCGNLVYDMDRLQFAIDDAPLVLTPREHAVLEA
LMLRARKTVSKATLAESVSAADAPTSEDAIEIYVSRLRRKLEASSATIITLRGLGYLLEDGAADE

Sequences:

>Translated_225_residues
MRLLLVEDNEELAHWLAMTLTHDGFMLDRVGAGEAAEDALRASTYDVVLLDLNLPGVSGKTVLRRMRERGDATPVLILTA
TGAVDEKVVCLGAGADDYIVKPFDARELVARIKVLARRQAPSRSNRVRCGNLVYDMDRLQFAIDDAPLVLTPREHAVLEA
LMLRARKTVSKATLAESVSAADAPTSEDAIEIYVSRLRRKLEASSATIITLRGLGYLLEDGAADE
>Mature_225_residues
MRLLLVEDNEELAHWLAMTLTHDGFMLDRVGAGEAAEDALRASTYDVVLLDLNLPGVSGKTVLRRMRERGDATPVLILTA
TGAVDEKVVCLGAGADDYIVKPFDARELVARIKVLARRQAPSRSNRVRCGNLVYDMDRLQFAIDDAPLVLTPREHAVLEA
LMLRARKTVSKATLAESVSAADAPTSEDAIEIYVSRLRRKLEASSATIITLRGLGYLLEDGAADE

Specific function: Transcriptional activator of the tctI tricarboxylate transport system operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=218, Percent_Identity=40.3669724770642, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1790552, Length=218, Percent_Identity=38.5321100917431, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1789809, Length=232, Percent_Identity=34.9137931034483, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1787375, Length=221, Percent_Identity=33.9366515837104, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1786784, Length=222, Percent_Identity=32.4324324324324, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI87082012, Length=218, Percent_Identity=30.2752293577982, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=33.0316742081448, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=30.9090909090909, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788394, Length=227, Percent_Identity=32.15859030837, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1787229, Length=224, Percent_Identity=29.0178571428571, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=33.7719298245614, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=32.4324324324324, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1790863, Length=229, Percent_Identity=27.5109170305677, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=34.5794392523364, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788521, Length=189, Percent_Identity=31.7460317460317, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790299, Length=135, Percent_Identity=28.8888888888889, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24572; Mature: 24572

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLVEDNEELAHWLAMTLTHDGFMLDRVGAGEAAEDALRASTYDVVLLDLNLPGVSGK
CEEEEEECCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCEEEEEEEECCCCCCHH
TVLRRMRERGDATPVLILTATGAVDEKVVCLGAGADDYIVKPFDARELVARIKVLARRQA
HHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHCC
PSRSNRVRCGNLVYDMDRLQFAIDDAPLVLTPREHAVLEALMLRARKTVSKATLAESVSA
CCCCCCEEECCEEEEHHHHEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
ADAPTSEDAIEIYVSRLRRKLEASSATIITLRGLGYLLEDGAADE
CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHCCCCCCCC
>Mature Secondary Structure
MRLLLVEDNEELAHWLAMTLTHDGFMLDRVGAGEAAEDALRASTYDVVLLDLNLPGVSGK
CEEEEEECCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCEEEEEEEECCCCCCHH
TVLRRMRERGDATPVLILTATGAVDEKVVCLGAGADDYIVKPFDARELVARIKVLARRQA
HHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHCC
PSRSNRVRCGNLVYDMDRLQFAIDDAPLVLTPREHAVLEALMLRARKTVSKATLAESVSA
CCCCCCEEECCEEEEHHHHEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
ADAPTSEDAIEIYVSRLRRKLEASSATIITLRGLGYLLEDGAADE
CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2666399; 11083839; 11677609 [H]