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The map label for this gene is sucD [H]

Identifier: 238028529

GI number: 238028529

Start: 3388969

End: 3389850

Strand: Reverse

Name: sucD [H]

Synonym: bglu_1g29930

Alternate gene names: 238028529

Gene position: 3389850-3388969 (Counterclockwise)

Preceding gene: 238028530

Following gene: 238028528

Centisome position: 86.77

GC content: 65.19

Gene sequence:

>882_bases
ATGTCGATTCTGATCAACAAAGACACCAAGGTCATCACGCAGGGCATCACCGGCAAGACGGGCCAGTTCCACACGCGCGC
TTGCCGCGAATACGCGAACGGCCGCGAGGCATTCGTCGCGGGCGTGAACCCGAAGAAGGCCGGCGAGGATTTCGAAGGTA
TTCCGATCTACGCGAGCGTCAAGGAAGCGAAGGCCGAGACCGGTGCGACCGTGTCGGTCATCTACGTGCCGCCGGCAGGC
GCGGCAGCGGCCATCTGGGAAGCCGTCGAGGCCGATCTCGATCTCGCGATCTGCATCACGGAAGGCATTCCGGTCCGCGA
CATGATCGAAGTGAAGGACCGCATGCGCCGCGAAGGCCGCAAGACGCTGCTGCTCGGGCCGAACTGCCCGGGCACGATCA
CGCCGGACGAGCTGAAGATCGGCATCATGCCGGGTCACATCCACCGCAAGGGCCGCATCGGCGTCGTGTCGCGTTCGGGC
ACGCTGACGTATGAAGCGGTCGCGCAGCTGACGGCGCTGGGCCTGGGCCAGTCGTCGGCGGTCGGTATCGGCGGCGATCC
GATCAACGGCCTCAAGCACATCGACGTGATGAAGATGTTCAACGACGATCCGGAGACGGACGCGGTCGTGATGATCGGCG
AAATCGGCGGCCCGGACGAAGCGACGGCGGCCGAGTGGATCAAGGGCAACATGAAGAAGCCGGTGGTCGGCTTCATCGCC
GGTGTCACGGCGCCTCCGGGCAAGCGCATGGGCCACGCCGGCGCGCTGATCTCGGGCGGTGCGGATACGGCCGAGGCGAA
GCTGGAAATCATGGACGCGTGCGGCATCAAGGTCACGCGCAATCCGTCCGAAATGGGCCGTCTGCTGAAGGCAGCGATCT
GA

Upstream 100 bases:

>100_bases
CAGAAGGTCGTGGCGGCCGCTGCCGGCAAGTAAGCATCGTTGCATTGAACACGCATGGCGGCGCGCCGGTTCGCGACGCC
TATCGAACAGAGGTCAATAC

Downstream 100 bases:

>100_bases
ATTTCGGTTGGGGCGTCCCGCCCCGCGGTAAGGAAACGCCGGCTTCGCGCCGGCGTTTTTTTTGCTAGTCTTCACGGACG
GCGTGGGCGGCGGCCCGGGT

Product: succinyl-CoA synthetase subunit alpha

Products: NA

Alternate protein names: Succinyl-CoA synthetase subunit alpha; SCS-alpha [H]

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MSILINKDTKVITQGITGKTGQFHTRACREYANGREAFVAGVNPKKAGEDFEGIPIYASVKEAKAETGATVSVIYVPPAG
AAAAIWEAVEADLDLAICITEGIPVRDMIEVKDRMRREGRKTLLLGPNCPGTITPDELKIGIMPGHIHRKGRIGVVSRSG
TLTYEAVAQLTALGLGQSSAVGIGGDPINGLKHIDVMKMFNDDPETDAVVMIGEIGGPDEATAAEWIKGNMKKPVVGFIA
GVTAPPGKRMGHAGALISGGADTAEAKLEIMDACGIKVTRNPSEMGRLLKAAI

Sequences:

>Translated_293_residues
MSILINKDTKVITQGITGKTGQFHTRACREYANGREAFVAGVNPKKAGEDFEGIPIYASVKEAKAETGATVSVIYVPPAG
AAAAIWEAVEADLDLAICITEGIPVRDMIEVKDRMRREGRKTLLLGPNCPGTITPDELKIGIMPGHIHRKGRIGVVSRSG
TLTYEAVAQLTALGLGQSSAVGIGGDPINGLKHIDVMKMFNDDPETDAVVMIGEIGGPDEATAAEWIKGNMKKPVVGFIA
GVTAPPGKRMGHAGALISGGADTAEAKLEIMDACGIKVTRNPSEMGRLLKAAI
>Mature_292_residues
SILINKDTKVITQGITGKTGQFHTRACREYANGREAFVAGVNPKKAGEDFEGIPIYASVKEAKAETGATVSVIYVPPAGA
AAAIWEAVEADLDLAICITEGIPVRDMIEVKDRMRREGRKTLLLGPNCPGTITPDELKIGIMPGHIHRKGRIGVVSRSGT
LTYEAVAQLTALGLGQSSAVGIGGDPINGLKHIDVMKMFNDDPETDAVVMIGEIGGPDEATAAEWIKGNMKKPVVGFIAG
VTAPPGKRMGHAGALISGGADTAEAKLEIMDACGIKVTRNPSEMGRLLKAAI

Specific function: Unknown

COG id: COG0074

COG function: function code C; Succinyl-CoA synthetase, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the succinate/malate CoA ligase alpha subunit family [H]

Homologues:

Organism=Homo sapiens, GI109452591, Length=288, Percent_Identity=55.5555555555556, Blast_Score=270, Evalue=9e-73,
Organism=Homo sapiens, GI38569423, Length=208, Percent_Identity=30.7692307692308, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI38569421, Length=208, Percent_Identity=30.7692307692308, Blast_Score=83, Evalue=3e-16,
Organism=Escherichia coli, GI1786949, Length=293, Percent_Identity=54.6075085324232, Blast_Score=312, Evalue=1e-86,
Organism=Escherichia coli, GI1786513, Length=185, Percent_Identity=28.1081081081081, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17550194, Length=296, Percent_Identity=54.0540540540541, Blast_Score=300, Evalue=5e-82,
Organism=Caenorhabditis elegans, GI17553126, Length=296, Percent_Identity=53.7162162162162, Blast_Score=298, Evalue=3e-81,
Organism=Caenorhabditis elegans, GI17557344, Length=312, Percent_Identity=26.6025641025641, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17551266, Length=254, Percent_Identity=26.3779527559055, Blast_Score=74, Evalue=9e-14,
Organism=Saccharomyces cerevisiae, GI6324716, Length=296, Percent_Identity=47.972972972973, Blast_Score=261, Evalue=6e-71,
Organism=Drosophila melanogaster, GI21356559, Length=292, Percent_Identity=50, Blast_Score=285, Evalue=2e-77,
Organism=Drosophila melanogaster, GI28574296, Length=292, Percent_Identity=54.1095890410959, Blast_Score=276, Evalue=2e-74,
Organism=Drosophila melanogaster, GI281363477, Length=253, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI281363475, Length=253, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI281363473, Length=253, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=6e-14,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017440
- InterPro:   IPR003781
- InterPro:   IPR005810
- InterPro:   IPR005811
- InterPro:   IPR016040
- InterPro:   IPR016102 [H]

Pfam domain/function: PF02629 CoA_binding; PF00549 Ligase_CoA [H]

EC number: =6.2.1.5 [H]

Molecular weight: Translated: 30723; Mature: 30592

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS01216 SUCCINYL_COA_LIG_1 ; PS00399 SUCCINYL_COA_LIG_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSILINKDTKVITQGITGKTGQFHTRACREYANGREAFVAGVNPKKAGEDFEGIPIYASV
CEEEEECCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCEEEEEH
KEAKAETGATVSVIYVPPAGAAAAIWEAVEADLDLAICITEGIPVRDMIEVKDRMRREGR
HHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC
KTLLLGPNCPGTITPDELKIGIMPGHIHRKGRIGVVSRSGTLTYEAVAQLTALGLGQSSA
EEEEECCCCCCCCCCCCEEEEEECCCEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCE
VGIGGDPINGLKHIDVMKMFNDDPETDAVVMIGEIGGPDEATAAEWIKGNMKKPVVGFIA
EECCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCHHHHEE
GVTAPPGKRMGHAGALISGGADTAEAKLEIMDACGIKVTRNPSEMGRLLKAAI
CCCCCCCCCCCCCCEEEECCCCCCHHHEEEEECCCCEEECCHHHHHHHHHHCC
>Mature Secondary Structure 
SILINKDTKVITQGITGKTGQFHTRACREYANGREAFVAGVNPKKAGEDFEGIPIYASV
EEEEECCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCEEEEEH
KEAKAETGATVSVIYVPPAGAAAAIWEAVEADLDLAICITEGIPVRDMIEVKDRMRREGR
HHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC
KTLLLGPNCPGTITPDELKIGIMPGHIHRKGRIGVVSRSGTLTYEAVAQLTALGLGQSSA
EEEEECCCCCCCCCCCCEEEEEECCCEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCE
VGIGGDPINGLKHIDVMKMFNDDPETDAVVMIGEIGGPDEATAAEWIKGNMKKPVVGFIA
EECCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCHHHHEE
GVTAPPGKRMGHAGALISGGADTAEAKLEIMDACGIKVTRNPSEMGRLLKAAI
CCCCCCCCCCCCCCEEEECCCCCCHHHEEEEECCCCEEECCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA