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The map label for this gene is lsrR [H]

Identifier: 238028480

GI number: 238028480

Start: 3332806

End: 3333753

Strand: Direct

Name: lsrR [H]

Synonym: bglu_1g29440

Alternate gene names: 238028480

Gene position: 3332806-3333753 (Clockwise)

Preceding gene: 238028479

Following gene: 238028489

Centisome position: 85.31

GC content: 70.78

Gene sequence:

>948_bases
GTGTCCAAATCCTCTGAAAAACTCGATCTCGCGACACGCGCCGCCTGGCTCTACTACGTGGCCGGCAACACCCAGAACGA
GATCGCCGAAAAGCTGCGGGTGTCGCGACCGGTCGCGCAGCGGCTGGTCGCGTTCGCGGTCGAGAAGAACCTGATCCGCG
TGCGCGTCGATCACGGCGTGGCCGACTGCCTCGATCTGGCCGCGCAGCTCTCGAAGCGCTACGGCCTGTCGATGTGCGAG
GTGGTGCCGATCGACTCGGACACCCCGGACGCGGTCGACCGCAAGCTCGCGGTGGCGGGTGCGCAGGTCATGGAGCGTTA
CCTGAACGAGGAGCGCGCGATGGTGATCGCGGTCAGCAGCGGCCGCACGCTGAAGGCGGCCGTCGCGCAGATCGCGCAGC
TCGATCGCCCCCAGCACCGGCTGGTGTCGATGGTGGGCGCGATCGCGCGCGACGGCTCGTCGAACCCCTACGACGTCGCG
CAGCACATCTCGGAGAAGACGGGTGGCAAGCACTTCCTGCTGCCGGCGCCGCTCGTCGCCGACAACGACGCCGAACGCGC
GCAGTGGTGCAACCACCGGCTCTACCGCATCGTCGAGCAACTGACGGCCGACGCCGACGTGGCGTTCGTCGGGATCGGCA
ACGTCGGGCCGGACTGTCCGCTGTTCGTGGACGGCTTCCTCACGCCCGACGAGCTGAACGAGATGATGGCGTGCGGCGCG
GTGGCCGAGATGGTCGGGTTGCCGATCGACGCGCAAGGCCGGCGCGTGGTCACGCCGTCCACGGCGCGCGTGACGAGCGT
GTCGATGGAGGCGCCGCCGCGCCGGCCGACCATCGGCTTCGCGGGCGGGCCGCGCAAGCAGGCCGCCGTGCTGGCCGCGC
TGCGCGGCGGCTGGCTGTCGGGACTCGTCACCGACGAGACCTGCGCGCGGGCGGCGCTGGCCGGCTGA

Upstream 100 bases:

>100_bases
GTCCGGCCGCTGTTCGAACCGTCGCGCGCACGCCTCGCCTGACGGCGCCTGCGTTACGATCCGCTCCTTGTCCAGCCGCT
CGTCCGACAGTCCACACATC

Downstream 100 bases:

>100_bases
GTCCGAACCGGGCCGCCAGGCCGACTGCGCGGCCTACCGCGCAGTCGGCGCTGCCGTGCGCCGCCTCACGCGGCCAGCGC
GTGCGGCGAGCGCCGCTCGA

Product: deoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MSKSSEKLDLATRAAWLYYVAGNTQNEIAEKLRVSRPVAQRLVAFAVEKNLIRVRVDHGVADCLDLAAQLSKRYGLSMCE
VVPIDSDTPDAVDRKLAVAGAQVMERYLNEERAMVIAVSSGRTLKAAVAQIAQLDRPQHRLVSMVGAIARDGSSNPYDVA
QHISEKTGGKHFLLPAPLVADNDAERAQWCNHRLYRIVEQLTADADVAFVGIGNVGPDCPLFVDGFLTPDELNEMMACGA
VAEMVGLPIDAQGRRVVTPSTARVTSVSMEAPPRRPTIGFAGGPRKQAAVLAALRGGWLSGLVTDETCARAALAG

Sequences:

>Translated_315_residues
MSKSSEKLDLATRAAWLYYVAGNTQNEIAEKLRVSRPVAQRLVAFAVEKNLIRVRVDHGVADCLDLAAQLSKRYGLSMCE
VVPIDSDTPDAVDRKLAVAGAQVMERYLNEERAMVIAVSSGRTLKAAVAQIAQLDRPQHRLVSMVGAIARDGSSNPYDVA
QHISEKTGGKHFLLPAPLVADNDAERAQWCNHRLYRIVEQLTADADVAFVGIGNVGPDCPLFVDGFLTPDELNEMMACGA
VAEMVGLPIDAQGRRVVTPSTARVTSVSMEAPPRRPTIGFAGGPRKQAAVLAALRGGWLSGLVTDETCARAALAG
>Mature_314_residues
SKSSEKLDLATRAAWLYYVAGNTQNEIAEKLRVSRPVAQRLVAFAVEKNLIRVRVDHGVADCLDLAAQLSKRYGLSMCEV
VPIDSDTPDAVDRKLAVAGAQVMERYLNEERAMVIAVSSGRTLKAAVAQIAQLDRPQHRLVSMVGAIARDGSSNPYDVAQ
HISEKTGGKHFLLPAPLVADNDAERAQWCNHRLYRIVEQLTADADVAFVGIGNVGPDCPLFVDGFLTPDELNEMMACGAV
AEMVGLPIDAQGRRVVTPSTARVTSVSMEAPPRRPTIGFAGGPRKQAAVLAALRGGWLSGLVTDETCARAALAG

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsrACDBFG operon and its own transcription. In the presence of AI- 2, lsrR is inactivated by binding phospho-AI-2, leading to the trans

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=307, Percent_Identity=27.0358306188925, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI87082414, Length=314, Percent_Identity=26.1146496815287, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 33771; Mature: 33640

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSSEKLDLATRAAWLYYVAGNTQNEIAEKLRVSRPVAQRLVAFAVEKNLIRVRVDHGV
CCCCCHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCH
ADCLDLAAQLSKRYGLSMCEVVPIDSDTPDAVDRKLAVAGAQVMERYLNEERAMVIAVSS
HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
GRTLKAAVAQIAQLDRPQHRLVSMVGAIARDGSSNPYDVAQHISEKTGGKHFLLPAPLVA
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCC
DNDAERAQWCNHRLYRIVEQLTADADVAFVGIGNVGPDCPLFVDGFLTPDELNEMMACGA
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHH
VAEMVGLPIDAQGRRVVTPSTARVTSVSMEAPPRRPTIGFAGGPRKQAAVLAALRGGWLS
HHHHHCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHH
GLVTDETCARAALAG
CCCCHHHHHHHHCCC
>Mature Secondary Structure 
SKSSEKLDLATRAAWLYYVAGNTQNEIAEKLRVSRPVAQRLVAFAVEKNLIRVRVDHGV
CCCCHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCH
ADCLDLAAQLSKRYGLSMCEVVPIDSDTPDAVDRKLAVAGAQVMERYLNEERAMVIAVSS
HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
GRTLKAAVAQIAQLDRPQHRLVSMVGAIARDGSSNPYDVAQHISEKTGGKHFLLPAPLVA
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCC
DNDAERAQWCNHRLYRIVEQLTADADVAFVGIGNVGPDCPLFVDGFLTPDELNEMMACGA
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHH
VAEMVGLPIDAQGRRVVTPSTARVTSVSMEAPPRRPTIGFAGGPRKQAAVLAALRGGWLS
HHHHHCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHH
GLVTDETCARAALAG
CCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA