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The map label for this gene is kdsB1 [H]

Identifier: 238028447

GI number: 238028447

Start: 3298946

End: 3299737

Strand: Direct

Name: kdsB1 [H]

Synonym: bglu_1g29110

Alternate gene names: 238028447

Gene position: 3298946-3299737 (Clockwise)

Preceding gene: 238028446

Following gene: 238028448

Centisome position: 84.45

GC content: 70.08

Gene sequence:

>792_bases
ATGCCCATCCCGTCGCCCTTCATCGCCGTCGTTCCCGCCCGCCTCGCCTCGACGCGTCTGCCGAACAAGCCGCTCGCCGA
TCTCGGCGGCAAGCCGATGGTGGTGCGGGTGGCCGAGCGCGCGCGCGACGCGGGCGCCGCGCGCGTGCTGGTCGCCTCGG
ACGCGCAGAGCGTGCTCGACGCCGCGCGCGCGGCCGGCTTCGACGCGCTGCTCACGCGCGCCGACCAACCGTCGGGCACG
GACCGCCTCGCCGAAGTCGCGACGCTGCTCGAATTGCCGGACGAAACGATCGTCGTCAACGTTCAAGGCGATGAGCCCTT
GATCGACCCGGCACTAATCCGCGACGTAGCGTCGCACCTTGCCACCCATCCGGCCTGCGCCATCGCCACCGCCGCGCATC
CGATCCACGATGCCGCCGACGTGTTCAACCCGAACGTCGTGAAGGTCGCGCTCGATGCCAAGAGCGTGGCGCTGTATTTC
TCGCGCGCGCCGATCCCGTGGTCGCGCGATGCCTGGCAGCCGCACTGGCCCGCCGTCGAAGCCATGCCGGCGCCGGCCTT
CCCGGTATATCGGCACATCGGGCTGTACGCCTATCGCGCGCGTTTCCTGCGCAGCTATCCCTCGCTCGCACAGGCACCGA
TCGAGCAGGCCGAGCAACTCGAACAGTTGCGCGCGATGTGGCATGGCGAGCGGATCGCCGTGCTCGTGACCGACGCCGCG
CCGGCGCCGGGCGTCGACACGCCGGCCGATCTCGCGCGCGTGCAGGCCCTTTTTCAGACGTCACAAAAATAA

Upstream 100 bases:

>100_bases
CCGCGCCTCGCGGCGGGCGCGCGGCGCCCCGGTTCCGGGCGCTCCGGCGCCCTCGCCCCACGCTCCCCCGACTCCATACC
CGCTCGCCGCCGAAACTCCG

Downstream 100 bases:

>100_bases
CCCATGGCATAATCGGGCGACTGTGCGAGCCGTCAGGCGCCGCCCACGTTGAGTCGCGCTCGCCAGCTCCCCCGCCGGCA
GCCGCGCGGGCTTACCCGCC

Product: 3-deoxy-manno-octulosonate cytidylyltransferase

Products: NA

Alternate protein names: CMP-2-keto-3-deoxyoctulosonic acid synthase 1; CKS 1; CMP-KDO synthase 1 [H]

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MPIPSPFIAVVPARLASTRLPNKPLADLGGKPMVVRVAERARDAGAARVLVASDAQSVLDAARAAGFDALLTRADQPSGT
DRLAEVATLLELPDETIVVNVQGDEPLIDPALIRDVASHLATHPACAIATAAHPIHDAADVFNPNVVKVALDAKSVALYF
SRAPIPWSRDAWQPHWPAVEAMPAPAFPVYRHIGLYAYRARFLRSYPSLAQAPIEQAEQLEQLRAMWHGERIAVLVTDAA
PAPGVDTPADLARVQALFQTSQK

Sequences:

>Translated_263_residues
MPIPSPFIAVVPARLASTRLPNKPLADLGGKPMVVRVAERARDAGAARVLVASDAQSVLDAARAAGFDALLTRADQPSGT
DRLAEVATLLELPDETIVVNVQGDEPLIDPALIRDVASHLATHPACAIATAAHPIHDAADVFNPNVVKVALDAKSVALYF
SRAPIPWSRDAWQPHWPAVEAMPAPAFPVYRHIGLYAYRARFLRSYPSLAQAPIEQAEQLEQLRAMWHGERIAVLVTDAA
PAPGVDTPADLARVQALFQTSQK
>Mature_262_residues
PIPSPFIAVVPARLASTRLPNKPLADLGGKPMVVRVAERARDAGAARVLVASDAQSVLDAARAAGFDALLTRADQPSGTD
RLAEVATLLELPDETIVVNVQGDEPLIDPALIRDVASHLATHPACAIATAAHPIHDAADVFNPNVVKVALDAKSVALYFS
RAPIPWSRDAWQPHWPAVEAMPAPAFPVYRHIGLYAYRARFLRSYPSLAQAPIEQAEQLEQLRAMWHGERIAVLVTDAAP
APGVDTPADLARVQALFQTSQK

Specific function: Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria [H]

COG id: COG1212

COG function: function code M; CMP-2-keto-3-deoxyoctulosonic acid synthetase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdsB family [H]

Homologues:

Organism=Escherichia coli, GI1787147, Length=250, Percent_Identity=51.6, Blast_Score=258, Evalue=3e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003329
- InterPro:   IPR004528 [H]

Pfam domain/function: PF02348 CTP_transf_3 [H]

EC number: =2.7.7.38 [H]

Molecular weight: Translated: 28207; Mature: 28075

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIPSPFIAVVPARLASTRLPNKPLADLGGKPMVVRVAERARDAGAARVLVASDAQSVLD
CCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCEEEHHHHHHHCCCCEEEEEECCHHHHHH
AARAAGFDALLTRADQPSGTDRLAEVATLLELPDETIVVNVQGDEPLIDPALIRDVASHL
HHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHH
ATHPACAIATAAHPIHDAADVFNPNVVKVALDAKSVALYFSRAPIPWSRDAWQPHWPAVE
HCCCHHHHHHHCCCCHHHHHHCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCC
AMPAPAFPVYRHIGLYAYRARFLRSYPSLAQAPIEQAEQLEQLRAMWHGERIAVLVTDAA
CCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
PAPGVDTPADLARVQALFQTSQK
CCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PIPSPFIAVVPARLASTRLPNKPLADLGGKPMVVRVAERARDAGAARVLVASDAQSVLD
CCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCEEEHHHHHHHCCCCEEEEEECCHHHHHH
AARAAGFDALLTRADQPSGTDRLAEVATLLELPDETIVVNVQGDEPLIDPALIRDVASHL
HHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHH
ATHPACAIATAAHPIHDAADVFNPNVVKVALDAKSVALYFSRAPIPWSRDAWQPHWPAVE
HCCCHHHHHHHCCCCHHHHHHCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCC
AMPAPAFPVYRHIGLYAYRARFLRSYPSLAQAPIEQAEQLEQLRAMWHGERIAVLVTDAA
CCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
PAPGVDTPADLARVQALFQTSQK
CCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA