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The map label for this gene is yjcC [H]

Identifier: 238028439

GI number: 238028439

Start: 3290940

End: 3292196

Strand: Direct

Name: yjcC [H]

Synonym: bglu_1g29030

Alternate gene names: 238028439

Gene position: 3290940-3292196 (Clockwise)

Preceding gene: 238028438

Following gene: 238028442

Centisome position: 84.24

GC content: 71.04

Gene sequence:

>1257_bases
ATGATGACCATGATCGACATCGATCCCCCCGGCTTCCAGCCGCCGCGCCCCATCGCCGGCGACGACGGCAACCGGCGCAC
CGTGCTGTACGGCGACTACACCGTGTTCAGCGTGTTCCAGCCCGTGTTCTCGGTCTCGCACCGGCGCGCGATCGGCTATC
ACGCCTCGCTGCGCGCGCGCGGCGCCGACGGCCAGCCGGTGCCGTCGCACGAGGTGTTCACGCAGGCGGCGCGGCGCGGG
GACCTGCTCGAACTCGGCCGGCTCGCCGAATCGCTGCACCTCGGCAACTTCCATGCCTTCGACAGCCACGACGAATGGCT
TTTCCTGAGCCTGCATCCGGCCGCGCTGATGGACACCATCTACGGCGACGCGCTGCTCGCCAACCTGAAGGCGATCGGCC
TGCCGCCGCAGCGCGTCGTGCTGGAAGTGCCGGAGCAGGCAGGCGGCGAGACCCCGCGCTTCGGCGCGATCGTCGACGGG
CTGCGCAAGGCAGGCTTCCTGATCGCGTTGGGCGGCTTCGGCGCAAAGCACTCGAACATCGACCGGGTCTGGCATCTGCA
TCCCGACATCGTCGCGCTCGATCGCGGCATCCTCGCGCAGGCAAGCGAGCACTCGCACCTCGAACGCGTGCTGCCAGGGC
TCGTCTCGCTGCTGCACGAATCGGGGCAGCTCGTGATGATGGGCGGCCTGTCCACCGAGCGCGACGCGCTGATCGCGCTC
GAATGCAACGTCGATTTCGTGCAGGGCCAGTATTTCTCGGGGCCGAGCGTCGAGCCGGTCCAGCCGCAGGCGGCCGCGGG
CGCGATGGACACGCTGTCGGCCGCGCTGCGGCTGCGCGTGGCCGAGCGCGAGCGGGGCCAGCAGGCGCGGCTCGCGCCCT
ATGTGATCGCGCTCCAGCAGTCCGGCGCGCGGCTCGCCGCCGGCGACGACGTGGACAGCGCCACCGGCGAGCTGCTTGCG
CTCGCCGACACCGCGCGCTGCTTCGTGCTCGATTCCTCGGGCCGCCAGATCGGCGACAACGTGCTGCCGCGCACGCGCGC
CTCGCAGCGCGCGAAGCGCTTCCGGCCGCTGCTGCACTCGGAAGGCGCGAGCTGGGAGCGGCGCCCGTACTTCATCGAGG
CGATGCGCGCGCCGGGGCGCGTGCGCGTGACCGCGCCCTATCTGTCGATCAACGAGGCGCATCTGTGCGTGACCGCCTCG
ATAGCGGTGCCGCGCGCGAGCGGCATGCAGGTGCTCTGCGTCGACATCAACTGGTGA

Upstream 100 bases:

>100_bases
GCCGCCGCGGCCCGCGCCGTCGGGCCCGGCCGGCGGCGCGCATGTTTCTTGCTCGGTCACACCGGGTAGGTAAACTGTCA
TACTCTTCCCGGCCGACATC

Downstream 100 bases:

>100_bases
GCGCGGGCGCCGTGCCCGACGCCGTGCCGTGCGCGGCGGCCGCTCAGGATTCGTCGGCGATCACCGGCAGATCGTGAACC
GAATCGCGCAGCGTGTGCAG

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MMTMIDIDPPGFQPPRPIAGDDGNRRTVLYGDYTVFSVFQPVFSVSHRRAIGYHASLRARGADGQPVPSHEVFTQAARRG
DLLELGRLAESLHLGNFHAFDSHDEWLFLSLHPAALMDTIYGDALLANLKAIGLPPQRVVLEVPEQAGGETPRFGAIVDG
LRKAGFLIALGGFGAKHSNIDRVWHLHPDIVALDRGILAQASEHSHLERVLPGLVSLLHESGQLVMMGGLSTERDALIAL
ECNVDFVQGQYFSGPSVEPVQPQAAAGAMDTLSAALRLRVAERERGQQARLAPYVIALQQSGARLAAGDDVDSATGELLA
LADTARCFVLDSSGRQIGDNVLPRTRASQRAKRFRPLLHSEGASWERRPYFIEAMRAPGRVRVTAPYLSINEAHLCVTAS
IAVPRASGMQVLCVDINW

Sequences:

>Translated_418_residues
MMTMIDIDPPGFQPPRPIAGDDGNRRTVLYGDYTVFSVFQPVFSVSHRRAIGYHASLRARGADGQPVPSHEVFTQAARRG
DLLELGRLAESLHLGNFHAFDSHDEWLFLSLHPAALMDTIYGDALLANLKAIGLPPQRVVLEVPEQAGGETPRFGAIVDG
LRKAGFLIALGGFGAKHSNIDRVWHLHPDIVALDRGILAQASEHSHLERVLPGLVSLLHESGQLVMMGGLSTERDALIAL
ECNVDFVQGQYFSGPSVEPVQPQAAAGAMDTLSAALRLRVAERERGQQARLAPYVIALQQSGARLAAGDDVDSATGELLA
LADTARCFVLDSSGRQIGDNVLPRTRASQRAKRFRPLLHSEGASWERRPYFIEAMRAPGRVRVTAPYLSINEAHLCVTAS
IAVPRASGMQVLCVDINW
>Mature_418_residues
MMTMIDIDPPGFQPPRPIAGDDGNRRTVLYGDYTVFSVFQPVFSVSHRRAIGYHASLRARGADGQPVPSHEVFTQAARRG
DLLELGRLAESLHLGNFHAFDSHDEWLFLSLHPAALMDTIYGDALLANLKAIGLPPQRVVLEVPEQAGGETPRFGAIVDG
LRKAGFLIALGGFGAKHSNIDRVWHLHPDIVALDRGILAQASEHSHLERVLPGLVSLLHESGQLVMMGGLSTERDALIAL
ECNVDFVQGQYFSGPSVEPVQPQAAAGAMDTLSAALRLRVAERERGQQARLAPYVIALQQSGARLAAGDDVDSATGELLA
LADTARCFVLDSSGRQIGDNVLPRTRASQRAKRFRPLLHSEGASWERRPYFIEAMRAPGRVRVTAPYLSINEAHLCVTAS
IAVPRASGMQVLCVDINW

Specific function: Overexpression reduces biofilm formation [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=252, Percent_Identity=22.6190476190476, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 45387; Mature: 45387

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTMIDIDPPGFQPPRPIAGDDGNRRTVLYGDYTVFSVFQPVFSVSHRRAIGYHASLRAR
CCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHEECEEEEEEEC
GADGQPVPSHEVFTQAARRGDLLELGRLAESLHLGNFHAFDSHDEWLFLSLHPAALMDTI
CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCEEEEEECHHHHHHHH
YGDALLANLKAIGLPPQRVVLEVPEQAGGETPRFGAIVDGLRKAGFLIALGGFGAKHSNI
HHHHHHHHHHHCCCCHHHEEEECCHHCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCC
DRVWHLHPDIVALDRGILAQASEHSHLERVLPGLVSLLHESGQLVMMGGLSTERDALIAL
CEEEEECCCCEECCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEE
ECNVDFVQGQYFSGPSVEPVQPQAAAGAMDTLSAALRLRVAERERGQQARLAPYVIALQQ
EECCEEECCEECCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC
SGARLAAGDDVDSATGELLALADTARCFVLDSSGRQIGDNVLPRTRASQRAKRFRPLLHS
CCCEEECCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
EGASWERRPYFIEAMRAPGRVRVTAPYLSINEAHLCVTASIAVPRASGMQVLCVDINW
CCCCCCCCCEEEEECCCCCEEEEEECEEECCCCEEEEEEEEECCCCCCCEEEEEEECC
>Mature Secondary Structure
MMTMIDIDPPGFQPPRPIAGDDGNRRTVLYGDYTVFSVFQPVFSVSHRRAIGYHASLRAR
CCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHEECEEEEEEEC
GADGQPVPSHEVFTQAARRGDLLELGRLAESLHLGNFHAFDSHDEWLFLSLHPAALMDTI
CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCEEEEEECHHHHHHHH
YGDALLANLKAIGLPPQRVVLEVPEQAGGETPRFGAIVDGLRKAGFLIALGGFGAKHSNI
HHHHHHHHHHHCCCCHHHEEEECCHHCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCC
DRVWHLHPDIVALDRGILAQASEHSHLERVLPGLVSLLHESGQLVMMGGLSTERDALIAL
CEEEEECCCCEECCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEE
ECNVDFVQGQYFSGPSVEPVQPQAAAGAMDTLSAALRLRVAERERGQQARLAPYVIALQQ
EECCEEECCEECCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC
SGARLAAGDDVDSATGELLALADTARCFVLDSSGRQIGDNVLPRTRASQRAKRFRPLLHS
CCCEEECCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
EGASWERRPYFIEAMRAPGRVRVTAPYLSINEAHLCVTASIAVPRASGMQVLCVDINW
CCCCCCCCCEEEEECCCCCEEEEEECEEECCCCEEEEEEEEECCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]